Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11778g00001 ATGGCTAAGTCCAGTTGTTGCAGTTGTTTAAAATCCTTGTTCTTGATTTCTTCCATTCTATTTAGTTCTTATTTGATTTGCTGTGAGGCAGAAGGCAATCCGGCAGTAGTGAATGGATTATCATATTCCTTCTATTCCGAAAGCTGTCCCAACCTTGAAAGCATTGTCATAAACCATCTCAGAAATGTGTTCAAGCAAGCTCATTGGCAAGCTCCAGCCTTACTCGTCATTTTCTTCCATGATTATTTTGTTCAGGGATGTGATGGATCTTTGCTACTGGATGGTAATCCAGGTGAAAGGGATCATCCACTGAATAGAGGCATAAGCTCTAAGGCTGTGCAGACCATTGATGACATAAGAGAAGTTGTTCACAACAACTGTGGAAGGATAGTTTCTTGTGCAGATATCACTGTCTTGGCAGCTCGTGATGCTGTTTTTCTTTCTGGAGGTCCCTATTTCAATGTGTCACTTGGAAGACGAGACAGTCTAAACTTCAGCATTGAAGAAACAAACAATCTTCCATTACCCTACAACATCACCGATGTCACACTCAAAACATTTGAATCCAAAAACTTGGATGTTATAGATGTGGTTGCCTTATCAGGTGCACACACCATTGGTCGTACCCACTGTCATACATTCTACAACAGGTTTTCTCCTCAAGATCCCACCATGGACAAAACGTTAGCTAAACTTCTTAATTCTAATTGCCCTACCACATATTCACGTAACACTTTTCGTTTGGACTTCAGAACCCCCAAAACCTTCGATAACAAATACTACATTAACTTGATGAACCACCAAGGTTTGTTCACTTCCGACCAAGACTTGTTCAAAGACAAGAGGACAAAAGGGTTGGTAGAAGCCTTTGCACTTAATCAAACCTTGTTCTTCCACAAATTAATTCATGCTTTTGTAAAGATGAGCCAATTGGATGTGTTGACTCGAAATCAAGGTGAAATTCGTGCGAAATGTAATATGATAAATGATGAGAGAACTATGGTGAAGTATATTGTGGATGAGTTTGTAAAATTACCCAATTGA 1044 0.3946 MAKSSCCSCLKSLFLISSILFSSYLICCEAEGNPAVVNGLSYSFYSESCPNLESIVINHLRNVFKQAHWQAPALLVIFFHDYFVQGCDGSLLLDGNPGERDHPLNRGISSKAVQTIDDIREVVHNNCGRIVSCADITVLAARDAVFLSGGPYFNVSLGRRDSLNFSIEETNNLPLPYNITDVTLKTFESKNLDVIDVVALSGAHTIGRTHCHTFYNRFSPQDPTMDKTLAKLLNSNCPTTYSRNTFRLDFRTPKTFDNKYYINLMNHQGLFTSDQDLFKDKRTKGLVEAFALNQTLFFHKLIHAFVKMSQLDVLTRNQGEIRAKCNMINDERTMVKYIVDEFVKLPN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11778g00001 347 PRINTS Plant peroxidase signature 130 140 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Plant peroxidase signature 49 68 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Plant peroxidase signature 111 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Plant peroxidase signature 195 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Plant peroxidase signature 149 164 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Plant peroxidase signature 73 93 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 FunFam Peroxidase 174 308 - -
Vium11778g00001 347 Gene3D - 44 329 - -
Vium11778g00001 347 PANTHER - 31 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 FunFam Peroxidase 43 184 - -
Vium11778g00001 347 Gene3D Peroxidase, domain 2 174 308 - -
Vium11778g00001 347 CDD secretory_peroxidase 39 326 IPR033905 GO:0004601|GO:0042744
Vium11778g00001 347 ProSitePatterns Peroxidases proximal heme-ligand signature. 196 206 IPR019793 -
Vium11778g00001 347 SUPERFAMILY Heme-dependent peroxidases 36 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Haem peroxidase superfamily signature 149 161 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Haem peroxidase superfamily signature 196 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Haem peroxidase superfamily signature 71 85 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 PRINTS Haem peroxidase superfamily signature 131 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 ProSiteProfiles Plant heme peroxidase family profile. 39 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11778g00001 347 Pfam Peroxidase 58 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11778g00001 Vium-Chr11778 3675 8074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11778g00001 1 334 Peroxidase AT1G71695 47.674 4.68e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11778g00001 K00430 - gmx:100816373 513.457