Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11775g00001 TTTTTAAACGCTGGAATATTTGGAAATGGGACTGAATCATGCCACACACTGCCACACACCGCAACTAGAGCAGCCATGCTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCAGGCATCAGATTTGAAATCTTAGAAGCAATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACCGCTTCTGGAGATCTTGTTCCACTTTCCTATATTGCGGGTTTGCTAACTGGCAGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAATGCCAAGCAAGCTTTTGAATCGGCTAACATCAATTCTGCCTTCTTTGAATTGCAACCCAAGGAAGGCCTTGCCCTCGTTAATGGCACGGCTGTCGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGATGCAAATATACTGGCTGTGTTGTCTGAAGTTCTATCAGCCATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAGTTCACCGATCATTTGACACACAAATTAAAGCACCATCCTGGTCAGATTGAGGCTGCTGCCATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAGGATGCCAAGAAACTGCACGAAATAGATCCTTTGCAAAAGCCAAAACAAGATAGATATGCCCTCAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCCACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAATTTCCAAGGAACCCCAATCGGAGTCTCCATGGACAACACACGTTTGGCTCTTGCATCTATTGGAAAACTCATGTTTGCTCAATTCTCCGAGCTTGTCAACGATTTTTACAACAACGGTCTGCCTTCTAATCTCACTGCTAGCAGAAATCCTAGCTTTGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCCTATTGCTCTGAACTTCAGTATCTCGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGACGTGAACTCTCTTGGTCTGATTTCGTCCAGGAAGACAAATGAATCTATTGAGATCCTTAAGCTCATGTCTTCCACCTTCTTGATGGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGCTCGGTCAAGAACACTGTCAGTCAAGTTTCCAAGAGGACTCTTACCACAGGTGGCAACGGAGAACTCCACCCTTCAAGATTTTGCGAAAAGGATCTACTGAAAGTGGTTGACAGGGAGTATGTATTTTCCTACATAGATGACCCATGCAGTGCTACATACCCACTGACGCAAAAACTCAGGCAAGTGCTTGTAGACCATGCCTTGGTAAATGCAGAGAATGAGAAGGACGTTAACACATCGATCTTTCAAAAGATTGCAATTTTTGAGGAGGAGTTGAAGACCATCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGGAAAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTGGGTTGCTAACCGGAGAAAAGGTGAAGTCACCAGGTGAAGAGTTTGACAAATTATTCACTGCAATATGCCAGGGTAAAATCATCGATCCTCTTCTGGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCGATATGTTAA 1749 0.4437 FLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKQAFESANINSAFFELQPKEGLALVNGTAVGSGLASIVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSFDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLMALCQAIDLRHLEENLKSSVKNTVSQVSKRTLTTGGNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLTQKLRQVLVDHALVNAENEKDVNTSIFQKIAIFEEELKTILPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11775g00001 582 Gene3D - 1 128 IPR024083 -
Vium11775g00001 582 FunFam Phenylalanine ammonia-lyase 129 439 - -
Vium11775g00001 582 SUPERFAMILY L-aspartase-like 2 582 IPR008948 GO:0003824
Vium11775g00001 582 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 64 80 IPR022313 GO:0016841
Vium11775g00001 582 Gene3D Fumarase/aspartase (Central domain) 129 577 - -
Vium11775g00001 582 Pfam Aromatic amino acid lyase 15 404 IPR001106 -
Vium11775g00001 582 CDD PAL-HAL 16 392 IPR001106 -
Vium11775g00001 582 NCBIfam phenylalanine ammonia-lyase 1 571 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vium11775g00001 582 Gene3D - 395 516 IPR023144 -
Vium11775g00001 582 FunFam Phenylalanine ammonia-lyase 395 516 - -
Vium11775g00001 582 PANTHER HISTIDINE AMMONIA-LYASE 1 582 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11775g00001 Vium-Chr11775 6 1772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11775g00001 1 582 Monolignol Biosynthesis Gene Families AT2G37040 84.364 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11775g00001 K10775 - gmx:100811101 1105.51