Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1175g00011 ATGGATGCAAGTTATCTTTATCCACAATTAGCACATGGTTTAAGATCAAAATTTGTTGGAGGGAAGCAAGGCCCTGTTTACCCAAGCTTTCCCCTCTCAACCACCTCTGGGTCAGGCCAAACAGATGCTGGAAATTCTTTTATGGGTCTACCTTATGGTTCTCCATCCTCGTTACGGTATGATTTTCAGAATATGTCTGAACGCAAGCTTGGCATGTCATCTGGTGATTCTACTGATGCTATTGGGAATTCTGTTGTTGATTCTATAGAAAGTGGAACCTTCCGGACATCTGGAGTGGGGTTGATAACAGAAAATTTGATTAACTGTAACCTGCAAAGTTGGGTGAATAATTTTCCTGAGATTTCTTCTAGAGCAATGGTTGGTTTGAATAATAGTAGTAATTTTGTCTTCCATAATATTTGGGGCAGCAATACTGCTACTCAGCACACAGTTCCTTGTGGTACAAAAGCGGCAGAATCTTTTTCTTTTCCAGAATGGGGCTCACCTAAGTATGCAACTCCTTATATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCCATACAGGGCTTCTTGGTGTTGTGTGCTCATGCCATTGTTCCCACATGTCTGTTCTTAAGTTTTGCGAGCACTCGGGTTTACATGGTGGTGACCCAGGGGATGCTGTTTGTATGGAGAGTGGGGAGACCATTGCACAATGGCGGAAGCTTTACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGGATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCCGATGAAATCCAATGCATCCGTGTTTGATATGTCCAAGACTAATTTGTCTCATATTTTTAGTTCATCTGCAGTCATGTCAAGGTCTGGAAAGTCTTCTGACTATGTCATGTTTCCAAATAATGCTCATATGGACAACAATTTATTTATTGGTACATTGTCCAGAAAACAAGCAACAACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTTTACTGGTATTTCACAAAACAGCTTTGTTGATTTGTTGAAAAGCCAGTTAATGGAATCTAATCTGGCTATGTACACAACTGCACCAAATTTTGGTGGAACTCAGCTGGATGATGGTTGTCACCCTATACCTCCTTTCTTGGATTCTCTGAAAAGGAAAGTAAGTTTGTCAACGGTCCACTCACCTTTGCAAACACCAACAAACCTTTTGAAAGACCATGATTGCATAAAACCAAAAGCAAATGGTCTTGTAGGCAGAGATGCGGCTTCATCTAATGTTGACCTTAGGCTTGGTCAACCACCTCAGACGGGAAACCCACTTCCATCATTTGTAGAACCACTGCAGTTTAATGCCCTTGCCAGTACACCAAAATTGCAACCTCAGAAGCAGATGATTAATAATGCAGACCTCAGCAGGGAGGAGGGATTACAGAATAATTTTAGCTATTCTGCTGCTTCATTCAAATTGGTTGAAGAATTGCCTCAGCTTAAACCCAAGAACTATATGTCAGCTGTGGGTAAGGCTTCTGTTAAAGCTAGATCAGAAACACAAAATGTGGCCAAGGGTGTATCATTTTCACCATTTTTGCAAGTTGATGTACCTGGAAGAAAGACACAAGCTAGTGAAAATTTGTGGGCTGATGACAGCCATAACATGCCTAAGAAAATGTATTCTGATTATGGTCTCACAGGAAGGCAATCGAAAAATAAATCTGTCGTAGGGACCAATAAATATTTGGAAAATAATATAGGGGTGAGCTTTGCCAAAGATTCTGGTGGCAAAAGAAATCCGGGATTTGGAATTGGTCAGTTAATGAAATATCCAAGCTCCATGATGAGATCTGTTGGTGGTTATGATAGTTGTATTTCAGTTGTTAATGAAAAGATGTATGAACCAAATTTTGAATCTACCTTGCCATCAGATACATCGGTGCGGGCAAATATTTTGCATGGTTCACACAATACGTCTTCTCATGGGCTAGAAAATTATGTGATGAATACTCAGACCTCCATTCCATTTAAAGAGATTTTGAAAGGCAATCCCTGTCATGTTTCAGTTTCTGTGTCAAATCAGACTCCGACTTTGCCACAGCAGCAGGCCATTAATAGGGATGCTTATTTTGTTGATGAAAACACGAGGTTGCTTGCTGTGACACAGATACCAGAGTTATCTAAGCAATATCATGCATTGCATTTTAATATGAATCAGAAGCAAGGGGGATCCAGCAGTATTTTGAAATTTCAGCATTATACTTGTGAGGCTTCAACATCTGAACAGGGAACCTCTTGTGCAACATTGAAATTGCCTCAAAATAGGTCGATATTTGGGAATCATGAGAATACTGTTGGTTTAGAGAAGTTGCCTTCCCTCACAGGTATGAACGGATATTATCATTTGTCTGACCTGTCACCAACACCTTTACATTCTAAAGAAAAGGAATCACAATGTAAACATTCTTATGATCTTCAAAACGAAGAGACTTCTTTAAGCCTTGGTATAAACAAAGACAATATCAGATCTAGTGCATGTGAAAAATACTCCGAGCAATCACCAAATATATGTTTGGAAGGCAAGTATCCTTGTCCTGCTCTGATAAACTGTTGCCGAAGCAACTTTTCCTCAGGGATTGAACCCCTTCGTAAGAACCTAGGGCAACAACTTGCTGATGTCAGTGGTGAAACTTCTTTGAAGATGCCTTCAGATTTGTTTAGAAATCTGAATACTTCGAACAATGGAAATATCCACTTTGAGCAAGGTGGGCATGCTCCTCAATGGAGAGATGTGCCCAGTAAGGTCAGGAAAGCAGTTTGTGATGCGACATCTTTAGATCAAACATTTAATGGTTTCGATAAGGAAGCACGAGATGGTTTTCAACTTGGAAACATTTCCACAAAACGCTCCAAAATAACCACTGATATGGGAGACCTGTCAGAAGAGAAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTGATTACTCAGGCATCTGTGATGGTGAACAAAATTGATTACTGTACTGATGAAGCTATAGACACTGGCGTTGTCAACAAGCTCGAAGTCGATGAAGGGTCAGGTATTGATCAAGGCTGCATGTCAGATTTGGTTGAAAGTGAAAGAACCGGTGAGTCTCTAGGCTTGATCTCTGGGAATTATTTGAAAAATGGTTGTTCGAGAGTGTTGAATGATGAATCATGTTGCGATCTACTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGAAAGGAATCAAAATCATTTTGTGCTTTCTGCTAATTGTAAAACCAATCAATCTCAAAAAGTCAAGAGGGGCATCAATGGAAGAAAGCGAAAGAGAAATGTGGTGAAGATTCTAGATGCTTCACTATCTTCTGAATTCCCTTCCTTGTTGCACAATAAGAATAATGAAGATGCTGAGATTTTTAATTCCTCTTCTAGTTTGTCAAAAGAAATGCAAATTTCTCTGCCTAGCCTGCAGAAATCATTTAACAAGTCTTCCTTTGTTCAATCTTGTAACACACGTATACAGTCCGCATTTGCATCTAAATTTGTTTCCTGTAAGAATCGTCTGAGCAAGCATCTCATTCATAAAGTTTCCTATGAGTCTCTATCAGATTCTGATGCTGAGTTTCACTCACTGCCTGTATTTTCTGGAACAAAGAGATTGAGAAAGAATCTCACTTCTGATTTTGAGCAGTTTCATATACAAGAACCATCCTATGAGGAACCTGAAAATGGTAAGTTGAGGCCATTCTTATGCAGAAAGGAAAATGATCATAGAACAAGGCCAGTAGTATGTGGAAAACATGGTGAAATTTGTAAAGAACATTTGGCTAAAGAGGTGCAAAAGCCTGCAAAAATTGTATCCCTCAAGAAGGTCCTTAAGTCTTCCAAAAGGTGTATGAGCCACACAAATGGAAAACCTAGACTAACTTCAAAAAAGCAATGGAAGAAATTGAGCATTGGAACAGATAGTGGGTCCTGCTGTGGGAACCATGGTTTAAAAATTAAAGAACACGGTGAAACACAAACTACAATAATTTATAATAAAGCAAATGTTGATATGTCCCTGGAAGACTTGGAGAGAGGTGGCAAGCAAGATGCTAAAGCTAAAGCTAAGCAGGGTGTTAGGGTTGGAAATAGAGAAAATGTTCGATTGAAGGTGAAGAACAAGGACATTCGAAAACACCGCAGCATTAATGAGCTCACTGCTAAAGAAACCAAAGTGACGGATATGATGAATTGTGCTCAAGACAGAGAGACTGGTTTGTGTAGCCCAAAAAGTAGAAACTCTAGTCAAGGTCACCTAAACATATCTACTATAAACTCAGATACCTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATCAACTGTTTGTTGGAATGTTGTCAATGCCTAATTCGAGTGCACCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAGAAGTCGCTGGTGTTGCAGACCATGCCGGACCAACTCCAAAAATATTGCATGTGTCCTATGTGGATATGGAGGTGGGGCTATGACTCGAGCAGCAACGAGTCATGCGATTGTCAAGAGCCTCCTAAAAGTGTGGAATGGTGAGAAAGATGGCATGCCTAAGCATACAACTTCATGTGAATTTTTTGGAAAGGAAATATATGCATTCCCATCCTCAAAGGCTGGTCAAGAAAGGGTTTTAAAGACAAAAATCCGTGATACATCAACAGATCTGGTGAAAGTTCAAATATCTACAAATCATATGCAGCATACCCTCACTAGTCTTTCTAATTTTAAGGTACACAACAGCATTACTGCAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCGAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCGCGTCCCAGGGCAGATGTGGTTTGTTCCATTTGCAATCGATTCGGTGGTTCTTGTATAGAGTGCAGGGTGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGAAAAGATTGGATTTTATGGAAGATGCATGCTTCATGCTATTGAACCTAGATATCTGTCCATGTACGATCCTATTGATGAAATGGGAAATCAAGAAGAAAAGGAATTCACCTGTGCCAGGGTAGAGGGTTACAAGGGAAGAAGATGGGATGGTTTTCAGGATAATCACTGCCAAGTTGGATGCCTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAACGGGCAGAAATTATGTTCTCAAGGACTCATAAAATTCCCCGATTTGGATATGGAGCATGATTGTCGAAAGGAATACGCACGGTACAAACAAGCAAGGGGATGGAAACACCTTGTTGTGTACAAATCCCGTATACACGGACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTGGTTGAATATGTTGGTGAAATTGTGGGATTGCGTGTGGCTGATAAAAGGGAGAAGGATTATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGGTTTGTTAACCACTCGTGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAAAAGAAGGTTGTCTTCTTTGCTGAGAGGGATATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTTAACCACGAGGACGAAGGAAAGATTCCATGCTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 5877 0.4046 MDASYLYPQLAHGLRSKFVGGKQGPVYPSFPLSTTSGSGQTDAGNSFMGLPYGSPSSLRYDFQNMSERKLGMSSGDSTDAIGNSVVDSIESGTFRTSGVGLITENLINCNLQSWVNNFPEISSRAMVGLNNSSNFVFHNIWGSNTATQHTVPCGTKAAESFSFPEWGSPKYATPYMSGCPRVFCMGKSGHLLLSHTGLLGVVCSCHCSHMSVLKFCEHSGLHGGDPGDAVCMESGETIAQWRKLYFLKFGIRSLGNENGWDWPEVLSTTGSPMKSNASVFDMSKTNLSHIFSSSAVMSRSGKSSDYVMFPNNAHMDNNLFIGTLSRKQATTIQDGCNIPLKGFTGISQNSFVDLLKSQLMESNLAMYTTAPNFGGTQLDDGCHPIPPFLDSLKRKVSLSTVHSPLQTPTNLLKDHDCIKPKANGLVGRDAASSNVDLRLGQPPQTGNPLPSFVEPLQFNALASTPKLQPQKQMINNADLSREEGLQNNFSYSAASFKLVEELPQLKPKNYMSAVGKASVKARSETQNVAKGVSFSPFLQVDVPGRKTQASENLWADDSHNMPKKMYSDYGLTGRQSKNKSVVGTNKYLENNIGVSFAKDSGGKRNPGFGIGQLMKYPSSMMRSVGGYDSCISVVNEKMYEPNFESTLPSDTSVRANILHGSHNTSSHGLENYVMNTQTSIPFKEILKGNPCHVSVSVSNQTPTLPQQQAINRDAYFVDENTRLLAVTQIPELSKQYHALHFNMNQKQGGSSSILKFQHYTCEASTSEQGTSCATLKLPQNRSIFGNHENTVGLEKLPSLTGMNGYYHLSDLSPTPLHSKEKESQCKHSYDLQNEETSLSLGINKDNIRSSACEKYSEQSPNICLEGKYPCPALINCCRSNFSSGIEPLRKNLGQQLADVSGETSLKMPSDLFRNLNTSNNGNIHFEQGGHAPQWRDVPSKVRKAVCDATSLDQTFNGFDKEARDGFQLGNISTKRSKITTDMGDLSEEKENSNVSSGCSAPVITQASVMVNKIDYCTDEAIDTGVVNKLEVDEGSGIDQGCMSDLVESERTGESLGLISGNYLKNGCSRVLNDESCCDLLDDLKLLDSLIWKKERNQNHFVLSANCKTNQSQKVKRGINGRKRKRNVVKILDASLSSEFPSLLHNKNNEDAEIFNSSSSLSKEMQISLPSLQKSFNKSSFVQSCNTRIQSAFASKFVSCKNRLSKHLIHKVSYESLSDSDAEFHSLPVFSGTKRLRKNLTSDFEQFHIQEPSYEEPENGKLRPFLCRKENDHRTRPVVCGKHGEICKEHLAKEVQKPAKIVSLKKVLKSSKRCMSHTNGKPRLTSKKQWKKLSIGTDSGSCCGNHGLKIKEHGETQTTIIYNKANVDMSLEDLERGGKQDAKAKAKQGVRVGNRENVRLKVKNKDIRKHRSINELTAKETKVTDMMNCAQDRETGLCSPKSRNSSQGHLNISTINSDTFCCVCRSSSNDKINCLLECCQCLIRVHQACYGVSTLPKRSRWCCRPCRTNSKNIACVLCGYGGGAMTRAATSHAIVKSLLKVWNGEKDGMPKHTTSCEFFGKEIYAFPSSKAGQERVLKTKIRDTSTDLVKVQISTNHMQHTLTSLSNFKVHNSITAGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRFGGSCIECRVADCSVKFHPWCAHQKNLLQSETEGIDDEKIGFYGRCMLHAIEPRYLSMYDPIDEMGNQEEKEFTCARVEGYKGRRWDGFQDNHCQVGCLVPEEQLNAWIHINGQKLCSQGLIKFPDLDMEHDCRKEYARYKQARGWKHLVVYKSRIHGLGLYTSRFISRGEVVVEYVGEIVGLRVADKREKDYQSGKKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN 1958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1175g00011 1958 ProSiteProfiles Extended PHD (ePHD) domain profile. 1603 1717 IPR034732 -
Vium1175g00011 1958 ProSiteProfiles Zinc finger PHD-type profile. 1457 1508 IPR019787 -
Vium1175g00011 1958 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 634 1958 - -
Vium1175g00011 1958 SMART PHD_3 1661 1717 IPR001965 -
Vium1175g00011 1958 SMART PHD_3 1459 1506 IPR001965 -
Vium1175g00011 1958 Pfam PHD-zinc-finger like domain 1622 1697 - -
Vium1175g00011 1958 SUPERFAMILY SET domain 1776 1954 IPR046341 -
Vium1175g00011 1958 CDD SET_SETD1-like 1805 1954 - -
Vium1175g00011 1958 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1445 1513 IPR013083 -
Vium1175g00011 1958 SUPERFAMILY FYVE/PHD zinc finger 1454 1511 IPR011011 -
Vium1175g00011 1958 Gene3D SET domain 1726 1958 IPR046341 -
Vium1175g00011 1958 Pfam PHD-finger 1472 1506 - -
Vium1175g00011 1958 CDD ePHD 1624 1707 - -
Vium1175g00011 1958 SMART PostSET_3 1942 1958 IPR003616 -
Vium1175g00011 1958 Pfam SET domain 1825 1934 IPR001214 GO:0005515
Vium1175g00011 1958 ProSiteProfiles SET domain profile. 1814 1935 IPR001214 GO:0005515
Vium1175g00011 1958 ProSiteProfiles Post-SET domain profile. 1942 1958 IPR003616 -
Vium1175g00011 1958 Pfam Tify domain binding domain 198 244 IPR032308 -
Vium1175g00011 1958 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1603 1717 IPR013083 -
Vium1175g00011 1958 SMART set_7 1814 1941 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1175g00011 Vium-Chr1175 69712 86482 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1175g00011 1816 1954 C2H2 Transcription Factor Family AT2G23740 34.591 2.76e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium1175g00011 SET 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1175g00011 - - gmx:100816713 2885.13