Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1175g00010 ATGGAGGGCGCGTGGCAGAGGAATTGTGGTTCGCCGTTTCAGCCGTCGATGTCTGCGACGGTTTCCTCCGTATCGGCGCCGGAGCCGGAGATGGATGCAAGTTATCTTTATCCACAATTAGCACATGGTTTAAGATCAAAATTTGTTGGAGGGAAGCAAGGCCCTGTTTACCCAAGCTTTCCCCTCTCAACCACCTCTGGGTCAGGCCAAACAGATGCTGGAAATTCTTTTATGGGTCTACCTTATGGTTCTCCATCCTCGTTACGGTATGATTTTCAGAATATGTCTGAACGCAAGCTTGGCATGTCATCTGGTGATTCTACTGATGCTATTGGGAATTCTGTTGTTGATTCTATAGAAAGTGGAACCTTCCGGACATCTGGAGTGGGGTTGATAACAGAAAATTTGATTAACTGTAACCTGCAAAGTTGGGTGAATAATTTTCCTGAGATTTCTTCTAGAGCAATGGTTGGTTTGAATAATAGTAGTAATTTTGTCTTCCATAATATTTGGGGCAGCAATACTGCTACTCAGCACACAGTTCCTTGTGGTACAAAAGCGGCAGAATCTTTTTCTTTTCCAGAATGGGGCTCACCTAAGTATGCAACTCCTTATATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCCATACAGGGCTTCTTGGTGTTGTGTGCTCATGCCATTGTTCCCACATGTCTGTTCTTAAGTTTTGCGAGCACTCGGGTTTACATGGTGGTGACCCAGGGGATGCTGTTTGTATGGAGAGTGGGGAGACCATTGCACAATGGCGGAAGCTTTACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGGATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCCGATGAAATCCAATGCATCCGTGTTTGATATGTCCAAGACTAATTTGTCTCATATTTTTAGTTCATCTGCAGTCATGTCAAGGTCTGGAAAGTCTTCTGACTATGTCATGTTTCCAAATAATGCTCATATGGACAACAATTTATTTATTGGTACATTGTCCAGAAAACAAGCAACAACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTTTACTGGTATTTCACAAAACAGCTTTGTTGATTTGTTGAAAAGCCAGTTAATGGAATCTAATCTGGCTATGTACACAACTGCACCAAATTTTGGTGGAACTCAGCTGGATGATGGTTGTCACCCTATACCTCCTTTCTTGGATTCTCTGAAAAGGAAAGTAAGTTTGTCAACGGTCCACTCACCTTTGCAAACACCAACAAACCTTTTGAAAGACCATGATTGCATAAAACCAAAAGCAAATGGTCTTGTAGGCAGAGATGCGGCTTCATCTAATGTTGACCTTAGGCTTGGTCAACCACCTCAGACGGGAAACCCACTTCCATCATTTGTAGAACCACTGCAGTTTAATGCCCTTGCCAGTACACCAAAATTGCAACCTCAGAAGCAGATGATTAATAATGCAGACCTCAGCAGGGAGGAGGGATTACAGAATAATTTTAGCTATTCTGCTGCTTCATTCAAATTGGTTGAAGAATTGCCTCAGCTTAAACCCAAGAACTATATGTCAGCTGTGGGTAAGGCTTCTGTTAAAGCTAGATCAGAAACACAAAATGTGGCCAAGGGTGTATCATTTTCACCATTTTTGCAAGTTGATGTACCTGGAAGAAAGACACAAGCTAGTGAAAATTTGTGGGCTGATGACAGCCATAACATGCCTAAGAAAATGTATTCTGATTATGGTCTCACAGGAAGGCAATCGAAAAATAAATCTGTCGTAGGGACCAATAAATATTTGGAAAATAATATAGGGGTGAGCTTTGCCAAAGATTCTGGTGGCAAAAGAAATCCGGGATTTGGAATTGGTCAGTTAATGAAATATCCAAGCTCCATGATGAGATCTGTTGGTGGTTATGATAGTTGTATTTCAGTTGTTAATGAAAAGATGTATGAACCAAATTTTGAATCTACCTTGCCATCAGATACATCGGTGCGGGCAAATATTTTGCATGGTTCACACAATACGTCTTCTCATGGGCTAGAAAATTATGTGATGAATACTCAGACCTCCATTCCATTTAAAGAGATTTTGAAAGGCAATCCCTGTCATGTTTCAGTTTCTGTGTCAAATCAGACTCCGACTTTGCCACAGCAGCAGGCCATTAATAGGGATGCTTATTTTGTTGATGAAAACACGAGGTTGCTTGCTGTGACACAGATACCAGAGTTATCTAAGCAATATCATGCATTGCATTTTAATATGAATCAGAAGCAAGGGGGATCCAGCAGTATTTTGAAATTTCAGCATTATACTTGTGAGGCTTCAACATCTGAACAGGGAACCTCTTGTGCAACATTGAAATTGCCTCAAAATAGGTCGATATTTGGGAATCATGAGAATACTGTTGGTTTAGAGAAGTTGCCTTCCCTCACAGGTATGAACGGATATTATCATTTGTCTGACCTGTCACCAACACCTTTACATTCTAAAGAAAAGGAATCACAATGTAAACATTCTTATGATCTTCAAAACGAAGAGACTTCTTTAAGCCTTGGTATAAACAAAGACAATATCAGATCTAGTGCATGTGAAAAATACTCCGAGCAATCACCAAATATATGTTTGGAAGGCAAGTATCCTTGTCCTGCTCTGATAAACTGTTGCCGAAGCAACTTTTCCTCAGGGATTGAACCCCTTCGTAAGAACCTAGGGCAACAACTTGCTGATGTCAGTGGTGAAACTTCTTTGAAGATGCCTTCAGATTTGTTTAGAAATCTGAATACTTCGAACAATGGAAATATCCACTTTGAGCAAGGTGGGCATGCTCCTCAATGGAGAGATGTGCCCAGTAAGGTCAGGAAAGCAGTTTGTGATGCGACATCTTTAGATCAAACATTTAATGGTTTCGATAAGGAAGCACGAGATGGTTTTCAACTTGGAAACATTTCCACAAAACGCTCCAAAATAACCACTGATATGGGAGACCTGTCAGAAGAGAAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTGATTACTCAGGCATCTGTGATGGTGAACAAAATTGATTACTGTACTGATGAAGCTATAGACACTGGCGTTGTCAACAAGCTCGAAGTCGATGAAGGGTCAGGTATTGATCAAGGCTGCATGTCAGATTTGGTTGAAAGTGAAAGAACCGGTGAGTCTCTAGGCTTGATCTCTGGGAATTATTTGAAAAATGGTTGTTCGAGAGTGTTGAATGATGAATCATGTTGCGATCTACTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGAAAGGAATCAAAATCATTTTGTGCTTTCTGCTAATTGTAAAACCAATCAATCTCAAAAAGTCAAGAGGGGCATCAATGGAAGAAAGCGAAAGAGAAATGTGGTGAAGATTCTAGATGCTTCACTATCTTCTGAATTCCCTTCCTTGTTGCACAATAAGAATAATGAAGATGCTGAGATTTTTAATTCCTCTTCTAGTTTGTCAAAAGAAATGCAAATTTCTCTGCCTAGCCTGCAGAAATCATTTAACAAGTCTTCCTTTGTTCAATCTTGTAACACACGTATACAGTCCGCATTTGCATCTAAATTTGTTTCCTGTAAGAATCGTCTGAGCAAGCATCTCATTCATAAAGTTTCCTATGAGTCTCTATCAGATTCTGATGCTGAGTTTCACTCACTGCCTGTATTTTCTGGAACAAAGAGATTGAGAAAGAATCTCACTTCTGATTTTGAGCAGTTTCATATACAAGAACCATCCTATGAGGAACCTGAAAATGGTAAGTTGAGGCCATTCTTATGCAGAAAGGAAAATGATCATAGAACAAGGCCAGTAGTATGTGGAAAACATGGTGAAATTTGTAAAGAACATTTGGCTAAAGAGGTGCAAAAGCCTGCAAAAATTGTATCCCTCAAGAAGGTCCTTAAGTCTTCCAAAAGGTGTATGAGCCACACAAATGGAAAACCTAGACTAACTTCAAAAAAGCAATGGAAGAAATTGAGCATTGGAACAGATAGTGGGTCCTGCTGTGGGAACCATGGTTTAAAAATTAAAGAACACGGTGAAACACAAACTACAATAATTTATAATAAAGCAAATGTTGATATGTCCCTGGAAGACTTGGAGAGAGGTGGCAAGCAAGATGCTAAAGCTAAAGCTAAGCAGGGTGTTAGGGTTGGAAATAGAGAAAATGTTCGATTGAAGGTGAAGAACAAGGACATTCGAAAACACCGCAGCATTAATGAGCTCACTGCTAAAGAAACCAAAGTGACGGATATGATGAATTGTGCTCAAGACAGAGAGACTGGTTTGTGTAGCCCAAAAAGTAGAAACTCTAGTCAAGGTCACCTAAACATATCTACTATAAACTCAGATACCTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATCAACTGTTTGTTGGAATGTTGTCAATGCCTAATTCGAGTGCACCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAGAAGTCGCTGGTGTTGCAGACCATGCCGGACCAACTCCAAAAATATTGCATGTGTCCTATGTGGATATGGAGGTGGGGCTATGACTCGAGCAGCAACGAGTCATGCGATTGTCAAGAGCCTCCTAAAAGTGTGGAATGGTGAGAAAGATGGCATGCCTAAGCATACAACTTCATGTGAATTTTTTGGAAAGGAAATATATGCATTCCCATCCTCAAAGGCTGGTCAAGAAAGGGTTTTAAAGACAAAAATCCGTGATACATCAACAGATCTGGTGAAAGTTCAAATATCTACAAATCATATGCAGCATACCCTCACTAGTCTTTCTAATTTTAAGGTACACAACAGCATTACTGCAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCGAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCGCGTCCCAGGGCAGATGTGGTTTGTTCCATTTGCAATCGATTCGGTGGTTCTTGTATAGAGTGCAGGGTGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGAAAAGATTGGATTTTATGGAAGATGCATGCTTCATGCTATTGAACCTAGATATCTGTCCATGTACGATCCTATTGATGAAATGGGAAATCAAGAAGAAAAGGAATTCACCTGTGCCAGGGTAGAGGGTTACAAGGGAAGAAGATGGGATGGTTTTCAGGATAATCACTGCCAAGTTGGATGCCTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAACGGGCAGAAATTATGTTCTCAAGGACTCATAAAATTCCCCGATTTGGATATGGAGCATGATTGTCGAAAGGAATACGCACGGTACAAACAAGCAAGGGGATGGAAACACCTTGTTGTGTACAAATCCCGTATACACGGACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTGGTTGAATATGTTGGTGAAATTGTGGGATTGCGTGTGGCTGATAAAAGGGAGAAGGATTATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGGTTTGTTAACCACTCGTGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAAAAGAAGGTTGTCTTCTTTGCTGAGAGGGATATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTTAACCACGAGGACGAAGGAAAGATTCCATGCTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 5967 0.4082 MEGAWQRNCGSPFQPSMSATVSSVSAPEPEMDASYLYPQLAHGLRSKFVGGKQGPVYPSFPLSTTSGSGQTDAGNSFMGLPYGSPSSLRYDFQNMSERKLGMSSGDSTDAIGNSVVDSIESGTFRTSGVGLITENLINCNLQSWVNNFPEISSRAMVGLNNSSNFVFHNIWGSNTATQHTVPCGTKAAESFSFPEWGSPKYATPYMSGCPRVFCMGKSGHLLLSHTGLLGVVCSCHCSHMSVLKFCEHSGLHGGDPGDAVCMESGETIAQWRKLYFLKFGIRSLGNENGWDWPEVLSTTGSPMKSNASVFDMSKTNLSHIFSSSAVMSRSGKSSDYVMFPNNAHMDNNLFIGTLSRKQATTIQDGCNIPLKGFTGISQNSFVDLLKSQLMESNLAMYTTAPNFGGTQLDDGCHPIPPFLDSLKRKVSLSTVHSPLQTPTNLLKDHDCIKPKANGLVGRDAASSNVDLRLGQPPQTGNPLPSFVEPLQFNALASTPKLQPQKQMINNADLSREEGLQNNFSYSAASFKLVEELPQLKPKNYMSAVGKASVKARSETQNVAKGVSFSPFLQVDVPGRKTQASENLWADDSHNMPKKMYSDYGLTGRQSKNKSVVGTNKYLENNIGVSFAKDSGGKRNPGFGIGQLMKYPSSMMRSVGGYDSCISVVNEKMYEPNFESTLPSDTSVRANILHGSHNTSSHGLENYVMNTQTSIPFKEILKGNPCHVSVSVSNQTPTLPQQQAINRDAYFVDENTRLLAVTQIPELSKQYHALHFNMNQKQGGSSSILKFQHYTCEASTSEQGTSCATLKLPQNRSIFGNHENTVGLEKLPSLTGMNGYYHLSDLSPTPLHSKEKESQCKHSYDLQNEETSLSLGINKDNIRSSACEKYSEQSPNICLEGKYPCPALINCCRSNFSSGIEPLRKNLGQQLADVSGETSLKMPSDLFRNLNTSNNGNIHFEQGGHAPQWRDVPSKVRKAVCDATSLDQTFNGFDKEARDGFQLGNISTKRSKITTDMGDLSEEKENSNVSSGCSAPVITQASVMVNKIDYCTDEAIDTGVVNKLEVDEGSGIDQGCMSDLVESERTGESLGLISGNYLKNGCSRVLNDESCCDLLDDLKLLDSLIWKKERNQNHFVLSANCKTNQSQKVKRGINGRKRKRNVVKILDASLSSEFPSLLHNKNNEDAEIFNSSSSLSKEMQISLPSLQKSFNKSSFVQSCNTRIQSAFASKFVSCKNRLSKHLIHKVSYESLSDSDAEFHSLPVFSGTKRLRKNLTSDFEQFHIQEPSYEEPENGKLRPFLCRKENDHRTRPVVCGKHGEICKEHLAKEVQKPAKIVSLKKVLKSSKRCMSHTNGKPRLTSKKQWKKLSIGTDSGSCCGNHGLKIKEHGETQTTIIYNKANVDMSLEDLERGGKQDAKAKAKQGVRVGNRENVRLKVKNKDIRKHRSINELTAKETKVTDMMNCAQDRETGLCSPKSRNSSQGHLNISTINSDTFCCVCRSSSNDKINCLLECCQCLIRVHQACYGVSTLPKRSRWCCRPCRTNSKNIACVLCGYGGGAMTRAATSHAIVKSLLKVWNGEKDGMPKHTTSCEFFGKEIYAFPSSKAGQERVLKTKIRDTSTDLVKVQISTNHMQHTLTSLSNFKVHNSITAGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRFGGSCIECRVADCSVKFHPWCAHQKNLLQSETEGIDDEKIGFYGRCMLHAIEPRYLSMYDPIDEMGNQEEKEFTCARVEGYKGRRWDGFQDNHCQVGCLVPEEQLNAWIHINGQKLCSQGLIKFPDLDMEHDCRKEYARYKQARGWKHLVVYKSRIHGLGLYTSRFISRGEVVVEYVGEIVGLRVADKREKDYQSGKKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN 1988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1175g00010 1988 SMART PHD_3 1691 1747 IPR001965 -
Vium1175g00010 1988 SMART PHD_3 1489 1536 IPR001965 -
Vium1175g00010 1988 Pfam PHD-finger 1502 1536 - -
Vium1175g00010 1988 Pfam PHD-zinc-finger like domain 1652 1727 - -
Vium1175g00010 1988 SMART set_7 1844 1971 IPR001214 GO:0005515
Vium1175g00010 1988 MobiDBLite consensus disorder prediction 1 20 - -
Vium1175g00010 1988 Pfam SET domain 1855 1964 IPR001214 GO:0005515
Vium1175g00010 1988 Pfam Tify domain binding domain 228 274 IPR032308 -
Vium1175g00010 1988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1475 1543 IPR013083 -
Vium1175g00010 1988 ProSiteProfiles Post-SET domain profile. 1972 1988 IPR003616 -
Vium1175g00010 1988 SUPERFAMILY SET domain 1806 1984 IPR046341 -
Vium1175g00010 1988 ProSiteProfiles SET domain profile. 1844 1965 IPR001214 GO:0005515
Vium1175g00010 1988 CDD ePHD 1654 1737 - -
Vium1175g00010 1988 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 664 1988 - -
Vium1175g00010 1988 SMART PostSET_3 1972 1988 IPR003616 -
Vium1175g00010 1988 ProSiteProfiles Extended PHD (ePHD) domain profile. 1633 1747 IPR034732 -
Vium1175g00010 1988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1633 1747 IPR013083 -
Vium1175g00010 1988 ProSiteProfiles Zinc finger PHD-type profile. 1487 1538 IPR019787 -
Vium1175g00010 1988 Gene3D SET domain 1756 1988 IPR046341 -
Vium1175g00010 1988 CDD SET_SETD1-like 1835 1984 - -
Vium1175g00010 1988 SUPERFAMILY FYVE/PHD zinc finger 1484 1541 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1175g00010 Vium-Chr1175 69712 87467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1175g00010 1846 1984 C2H2 Transcription Factor Family AT2G23740 34.591 2.58e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium1175g00010 SET 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1175g00010 - - gmx:100816713 2921.72