Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1175g00009 ATGGAGGGCGCGTGGCAGAGGAATTGTGGTTCGCCGTTTCAGCCGTCGATGTCTGCGACGGTTTCCTCCGTATCGGCGCCGGAGCCGGAGATGGATGCAAGTTATCTTTATCCACAATTAGCACATGGTTTAAGATCAAAATTTGTTGGAGGGAAGCAAGGCCCTGTTTACCCAAGCTTTCCCCTCTCAACCACCTCTGGGTCAGGCCAAACAGATGCTGGAAATTCTTTTATGGGTCTACCTTATGGTTCTCCATCCTCGTTACGGTATGATTTTCAGAATATGTCTGAACGCAAGCTTGGCATGTCATCTGGTGATTCTACTGATGCTATTGGGAATTCTGTTGTTGATTCTATAGAAAGTGGAACCTTCCGGACATCTGGAGTGGGGTTGATAACAGAAAATTTGATTAACTGTAACCTGCAAAGTTGGGTGAATAATTTTCCTGAGATTTCTTCTAGAGCAATGGTTGGTTTGAATAATAGTAGTAATTTTGTCTTCCATAATATTTGGGGCAGCAATACTGCTACTCAGCACACAGTTCCTTGTGGTACAAAAGCGGCAGAATCTTTTTCTTTTCCAGAATGGGGCTCACCTAAGTATGCAACTCCTTATATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCCATACAGGGCTTCTTGGTGTTGTGTGCTCATGCCATTGTTCCCACATGTCTGTTCTTAAGTTTTGCGAGCACTCGGGTTTACATGGTGGTGACCCAGGGGATGCTGTTTGTATGGAGAGTGGGGAGACCATTGCACAATGGCGGAAGCTTTACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGGATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCCGATGAAATCCAATGCATCCGTGTTTGATATGTCCAAGACTAATTTGTCTCATATTTTTAGTTCATCTGCAGTCATGTCAAGGTCTGGAAAGTCTTCTGACTATGTCATGTTTCCAAATAATGCTCATATGGACAACAATTTATTTATTGGTACATTGTCCAGAAAACAAGCAACAACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTTTACTGGTATTTCACAAAACAGCTTTGTTGATTTGTTGAAAAGCCAGTTAATGGAATCTAATCTGGCTATGTACACAACTGCACCAAATTTTGGTGGAACTCAGCTGGATGATGGTTGTCACCCTATACCTCCTTTCTTGGATTCTCTGAAAAGGAAAGTAAGTTTGTCAACGGTCCACTCACCTTTGCAAACACCAACAAACCTTTTGAAAGACCATGATTGCATAAAACCAAAAGCAAATGGTCTTGTAGGCAGAGATGCGGCTTCATCTAATGTTGACCTTAGGCTTGGTCAACCACCTCAGACGGGAAACCCACTTCCATCATTTGTAGAACCACTGCAGTTTAATGCCCTTGCCAGTACACCAAAATTGCAACCTCAGAAGCAGATGATTAATAACCTCAGCAGGGAGGAGGGATTACAGAATAATTTTAGCTATTCTGCTGCTTCATTCAAATTGGTTGAAGAATTGCCTCAGCTTAAACCCAAGAACTATATGTCAGCTGTGGGTAAGGCTTCTGTTAAAGCTAGATCAGAAACACAAAATGTGGCCAAGGGTGTATCATTTTCACCATTTTTGCAAGTTGATGTACCTGGAAGAAAGACACAAGCTAGTGAAAATTTGTGGGCTGATGACAGCCATAACATGCCTAAGAAAATGTATTCTGATTATGGTCTCACAGGAAGGCAATCGAAAAATAAATCTGTCGTAGGGACCAATAAATATTTGGAAAATAATATAGGGGTGAGCTTTGCCAAAGATTCTGGTGGCAAAAGAAATCCGGGATTTGGAATTGGTCAGTTAATGAAATATCCAAGCTCCATGATGAGATCTGTTGGTGGTTATGATAGTTGTATTTCAGTTGTTAATGAAAAGATGTATGAACCAAATTTTGAATCTACCTTGCCATCAGATACATCGGTGCGGGCAAATATTTTGCATGGTTCACACAATACGTCTTCTCATGGGCTAGAAAATTATGTGATGAATACTCAGACCTCCATTCCATTTAAAGAGATTTTGAAAGGCAATCCCTGTCATGTTTCAGTTTCTGTGTCAAATCAGACTCCGACTTTGCCACAGCAGCAGGCCATTAATAGGGATGCTTATTTTGTTGATGAAAACACGAGGTTGCTTGCTGTGACACAGATACCAGAGTTATCTAAGCAATATCATGCATTGCATTTTAATATGAATCAGAAGCAAGGGGGATCCAGCAGTATTTTGAAATTTCAGCATTATACTTGTGAGGCTTCAACATCTGAACAGGGAACCTCTTGTGCAACATTGAAATTGCCTCAAAATAGGTCGATATTTGGGAATCATGAGAATACTGTTGGTTTAGAGAAGTTGCCTTCCCTCACAGGTATGAACGGATATTATCATTTGTCTGACCTGTCACCAACACCTTTACATTCTAAAGAAAAGGAATCACAATGTAAACATTCTTATGATCTTCAAAACGAAGAGACTTCTTTAAGCCTTGGTATAAACAAAGACAATATCAGATCTAGTGCATGTGAAAAATACTCCGAGCAATCACCAAATATATGTTTGGAAGGCAAGTATCCTTGTCCTGCTCTGATAAACTGTTGCCGAAGCAACTTTTCCTCAGGGATTGAACCCCTTCGTAAGAACCTAGGGCAACAACTTGCTGATGTCAGTGGTGAAACTTCTTTGAAGATGCCTTCAGATTTGTTTAGAAATCTGAATACTTCGAACAATGGAAATATCCACTTTGAGCAAGGTGGGCATGCTCCTCAATGGAGAGATGTGCCCAGTAAGGTCAGGAAAGCAGTTTGTGATGCGACATCTTTAGATCAAACATTTAATGGTTTCGATAAGGAAGCACGAGATGGTTTTCAACTTGGAAACATTTCCACAAAACGCTCCAAAATAACCACTGATATGGGAGACCTGTCAGAAGAGAAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTGATTACTCAGGCATCTGTGATGGTGAACAAAATTGATTACTGTACTGATGAAGCTATAGACACTGGCGTTGTCAACAAGCTCGAAGTCGATGAAGGGTCAGGTATTGATCAAGGCTGCATGTCAGATTTGGTTGAAAGTGAAAGAACCGGTGAGTCTCTAGGCTTGATCTCTGGGAATTATTTGAAAAATGGTTGTTCGAGAGTGTTGAATGATGAATCATGTTGCGATCTACTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGAAAGGAATCAAAATCATTTTGTGCTTTCTGCTAATTGTAAAACCAATCAATCTCAAAAAGTCAAGAGGGGCATCAATGGAAGAAAGCGAAAGAGAAATGTGGTGAAGATTCTAGATGCTTCACTATCTTCTGAATTCCCTTCCTTGTTGCACAATAAGAATAATGAAGATGCTGAGATTTTTAATTCCTCTTCTAGTTTGTCAAAAGAAATGCAAATTTCTCTGCCTAGCCTGCAGAAATCATTTAACAAGTCTTCCTTTGTTCAATCTTGTAACACACGTATACAGTCCGCATTTGCATCTAAATTTGTTTCCTGTAAGAATCGTCTGAGCAAGCATCTCATTCATAAAGTTTCCTATGAGTCTCTATCAGATTCTGATGCTGAGTTTCACTCACTGCCTGTATTTTCTGGAACAAAGAGATTGAGAAAGAATCTCACTTCTGATTTTGAGCAGTTTCATATACAAGAACCATCCTATGAGGAACCTGAAAATGGTAAGTTGAGGCCATTCTTATGCAGAAAGGAAAATGATCATAGAACAAGGCCAGTAGTATGTGGAAAACATGGTGAAATTTGTAAAGAACATTTGGCTAAAGAGGTGCAAAAGCCTGCAAAAATTGTATCCCTCAAGAAGGTCCTTAAGTCTTCCAAAAGGTGTATGAGCCACACAAATGGAAAACCTAGACTAACTTCAAAAAAGCAATGGAAGAAATTGAGCATTGGAACAGATAGTGGGTCCTGCTGTGGGAACCATGGTTTAAAAATTAAAGAACACGGTGAAACACAAACTACAATAATTTATAATAAAGCAAATGTTGATATGTCCCTGGAAGACTTGGAGAGAGGTGGCAAGCAAGATGCTAAAGCTAAAGCTAAGCAGGGTGTTAGGGTTGGAAATAGAGAAAATGTTCGATTGAAGGTGAAGAACAAGGACATTCGAAAACACCGCAGCATTAATGAGCTCACTGCTAAAGAAACCAAAGTGACGGATATGATGAATTGTGCTCAAGACAGAGAGACTGGTTTGTGTAGCCCAAAAAGTAGAAACTCTAGTCAAGGTCACCTAAACATATCTACTATAAACTCAGATACCTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATCAACTGTTTGTTGGAATGTTGTCAATGCCTAATTCGAGTGCACCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAGAAGTCGCTGGTGTTGCAGACCATGCCGGACCAACTCCAAAAATATTGCATGTGTCCTATGTGGATATGGAGGTGGGGCTATGACTCGAGCAGCAACGAGTCATGCGATTGTCAAGAGCCTCCTAAAAGTGTGGAATGGTGAGAAAGATGGCATGCCTAAGCATACAACTTCATGTGAATTTTTTGGAAAGGAAATATATGCATTCCCATCCTCAAAGGCTGGTCAAGAAAGGGTTTTAAAGACAAAAATCCGTGATACATCAACAGATCTGGTGAAAGTTCAAATATCTACAAATCATATGCAGCATACCCTCACTAGTCTTTCTAATTTTAAGGTACACAACAGCATTACTGCAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCGAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCGCGTCCCAGGGCAGATGTGGTTTGTTCCATTTGCAATCGATTCGGTGGTTCTTGTATAGAGTGCAGGGTGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGAAAAGATTGGATTTTATGGAAGATGCATGCTTCATGCTATTGAACCTAGATATCTGTCCATGTACGATCCTATTGATGAAATGGGAAATCAAGAAGAAAAGGAATTCACCTGTGCCAGGGTAGAGGGTTACAAGGGAAGAAGATGGGATGGTTTTCAGGATAATCACTGCCAAGTTGGATGCCTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAACGGGCAGAAATTATGTTCTCAAGGACTCATAAAATTCCCCGATTTGGATATGGAGCATGATTGTCGAAAGGAATACGCACGGTACAAACAAGCAAGGGGATGGAAACACCTTGTTGTGTACAAATCCCGTATACACGGACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTGGTTGAATATGTTGGTGAAATTGTGGGATTGCGTGTGGCTGATAAAAGGGAGAAGGATTATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGGTTTGTTAACCACTCGTGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAAAAGAAGGTTGTCTTCTTTGCTGAGAGGGATATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTTAACCACGAGGACGAAGGAAAGATTCCATGCTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 5961 0.4082 MEGAWQRNCGSPFQPSMSATVSSVSAPEPEMDASYLYPQLAHGLRSKFVGGKQGPVYPSFPLSTTSGSGQTDAGNSFMGLPYGSPSSLRYDFQNMSERKLGMSSGDSTDAIGNSVVDSIESGTFRTSGVGLITENLINCNLQSWVNNFPEISSRAMVGLNNSSNFVFHNIWGSNTATQHTVPCGTKAAESFSFPEWGSPKYATPYMSGCPRVFCMGKSGHLLLSHTGLLGVVCSCHCSHMSVLKFCEHSGLHGGDPGDAVCMESGETIAQWRKLYFLKFGIRSLGNENGWDWPEVLSTTGSPMKSNASVFDMSKTNLSHIFSSSAVMSRSGKSSDYVMFPNNAHMDNNLFIGTLSRKQATTIQDGCNIPLKGFTGISQNSFVDLLKSQLMESNLAMYTTAPNFGGTQLDDGCHPIPPFLDSLKRKVSLSTVHSPLQTPTNLLKDHDCIKPKANGLVGRDAASSNVDLRLGQPPQTGNPLPSFVEPLQFNALASTPKLQPQKQMINNLSREEGLQNNFSYSAASFKLVEELPQLKPKNYMSAVGKASVKARSETQNVAKGVSFSPFLQVDVPGRKTQASENLWADDSHNMPKKMYSDYGLTGRQSKNKSVVGTNKYLENNIGVSFAKDSGGKRNPGFGIGQLMKYPSSMMRSVGGYDSCISVVNEKMYEPNFESTLPSDTSVRANILHGSHNTSSHGLENYVMNTQTSIPFKEILKGNPCHVSVSVSNQTPTLPQQQAINRDAYFVDENTRLLAVTQIPELSKQYHALHFNMNQKQGGSSSILKFQHYTCEASTSEQGTSCATLKLPQNRSIFGNHENTVGLEKLPSLTGMNGYYHLSDLSPTPLHSKEKESQCKHSYDLQNEETSLSLGINKDNIRSSACEKYSEQSPNICLEGKYPCPALINCCRSNFSSGIEPLRKNLGQQLADVSGETSLKMPSDLFRNLNTSNNGNIHFEQGGHAPQWRDVPSKVRKAVCDATSLDQTFNGFDKEARDGFQLGNISTKRSKITTDMGDLSEEKENSNVSSGCSAPVITQASVMVNKIDYCTDEAIDTGVVNKLEVDEGSGIDQGCMSDLVESERTGESLGLISGNYLKNGCSRVLNDESCCDLLDDLKLLDSLIWKKERNQNHFVLSANCKTNQSQKVKRGINGRKRKRNVVKILDASLSSEFPSLLHNKNNEDAEIFNSSSSLSKEMQISLPSLQKSFNKSSFVQSCNTRIQSAFASKFVSCKNRLSKHLIHKVSYESLSDSDAEFHSLPVFSGTKRLRKNLTSDFEQFHIQEPSYEEPENGKLRPFLCRKENDHRTRPVVCGKHGEICKEHLAKEVQKPAKIVSLKKVLKSSKRCMSHTNGKPRLTSKKQWKKLSIGTDSGSCCGNHGLKIKEHGETQTTIIYNKANVDMSLEDLERGGKQDAKAKAKQGVRVGNRENVRLKVKNKDIRKHRSINELTAKETKVTDMMNCAQDRETGLCSPKSRNSSQGHLNISTINSDTFCCVCRSSSNDKINCLLECCQCLIRVHQACYGVSTLPKRSRWCCRPCRTNSKNIACVLCGYGGGAMTRAATSHAIVKSLLKVWNGEKDGMPKHTTSCEFFGKEIYAFPSSKAGQERVLKTKIRDTSTDLVKVQISTNHMQHTLTSLSNFKVHNSITAGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRFGGSCIECRVADCSVKFHPWCAHQKNLLQSETEGIDDEKIGFYGRCMLHAIEPRYLSMYDPIDEMGNQEEKEFTCARVEGYKGRRWDGFQDNHCQVGCLVPEEQLNAWIHINGQKLCSQGLIKFPDLDMEHDCRKEYARYKQARGWKHLVVYKSRIHGLGLYTSRFISRGEVVVEYVGEIVGLRVADKREKDYQSGKKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN 1986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1175g00009 1986 SMART PostSET_3 1970 1986 IPR003616 -
Vium1175g00009 1986 MobiDBLite consensus disorder prediction 1 20 - -
Vium1175g00009 1986 ProSiteProfiles SET domain profile. 1842 1963 IPR001214 GO:0005515
Vium1175g00009 1986 Pfam Tify domain binding domain 228 274 IPR032308 -
Vium1175g00009 1986 SMART set_7 1842 1969 IPR001214 GO:0005515
Vium1175g00009 1986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1473 1541 IPR013083 -
Vium1175g00009 1986 SUPERFAMILY SET domain 1804 1982 IPR046341 -
Vium1175g00009 1986 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 515 1986 - -
Vium1175g00009 1986 CDD SET_SETD1-like 1833 1982 - -
Vium1175g00009 1986 ProSiteProfiles Extended PHD (ePHD) domain profile. 1631 1745 IPR034732 -
Vium1175g00009 1986 Pfam SET domain 1853 1962 IPR001214 GO:0005515
Vium1175g00009 1986 ProSiteProfiles Post-SET domain profile. 1970 1986 IPR003616 -
Vium1175g00009 1986 SMART PHD_3 1487 1534 IPR001965 -
Vium1175g00009 1986 SMART PHD_3 1689 1745 IPR001965 -
Vium1175g00009 1986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1631 1745 IPR013083 -
Vium1175g00009 1986 Pfam PHD-finger 1500 1534 - -
Vium1175g00009 1986 Pfam PHD-zinc-finger like domain 1650 1725 - -
Vium1175g00009 1986 CDD ePHD 1652 1735 - -
Vium1175g00009 1986 ProSiteProfiles Zinc finger PHD-type profile. 1485 1536 IPR019787 -
Vium1175g00009 1986 Gene3D SET domain 1754 1986 IPR046341 -
Vium1175g00009 1986 SUPERFAMILY FYVE/PHD zinc finger 1482 1539 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1175g00009 Vium-Chr1175 69712 87467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1175g00009 1844 1982 C2H2 Transcription Factor Family AT2G23740 34.591 2.51e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium1175g00009 SET 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1175g00009 - - gmx:100816713 2912.86