Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1175g00008 ATGGAGGGCGCGTGGCAGAGGAATTGTGGTTCGCCGTTTCAGCCGTCGATGTCTGCGACGGTTTCCTCCGTATCGGCGCCGGAGCCGGAGATGGATGCAAGTTATCTTTATCCACAATTAGCACATGGTTTAAGATCAAAATTTGTTGGAGGGAAGCAAGGCCCTGTTTACCCAAGCTTTCCCCTCTCAACCACCTCTGGGTCAGGCCAAACAGATGCTGGAAATTCTTTTATGGGTCTACCTTATGGTTCTCCATCCTCGTTACGGTATGATTTTCAGAATATGTCTGAACGCAAGCTTGGCATGTCATCTGGTGATTCTACTGATGCTATTGGGAATTCTGTTGTTGATTCTATAGAAAGTGGAACCTTCCGGACATCTGGAGTGGGGTTGATAACAGAAAATTTGATTAACTGTAACCTGCAAAGTTGGGTGAATAATTTTCCTGAGATTTCTTCTAGAGCAATGGTTGGTTTGAATAATAGTAGTAATTTTGTCTTCCATAATATTTGGGGCAGCAATACTGCTACTCAGCACACAGTTCCTTGTGGTACAAAAGCGGCAGAATCTTTTTCTTTTCCAGAATGGGGCTCACCTAAGTATGCAACTCCTTATATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCCATACAGGGCTTCTTGGTGTTGTGTGCTCATGCCATTGTTCCCACATGTCTGTTCTTAAGTTTTGCGAGCACTCGGGTTTACATGGTGGTGACCCAGGGGATGCTGTTTGTATGGAGAGTGGGGAGACCATTGCACAATGGCGGAAGCTTTACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGGATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCCGATGAAATCCAATGCATCCGTGTTTGATATGTCCAAGACTAATTTGTCTCATATTTTTAGTTCATCTGCAGTCATGTCAAGAAAACAAGCAACAACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTTTACTGGTATTTCACAAAACAGCTTTGTTGATTTGTTGAAAAGCCAGTTAATGGAATCTAATCTGGCTATGTACACAACTGCACCAAATTTTGGTGGAACTCAGCTGGATGATGGTTGTCACCCTATACCTCCTTTCTTGGATTCTCTGAAAAGGAAAGTAAGTTTGTCAACGGTCCACTCACCTTTGCAAACACCAACAAACCTTTTGAAAGACCATGATTGCATAAAACCAAAAGCAAATGGTCTTGTAGGCAGAGATGCGGCTTCATCTAATGTTGACCTTAGGCTTGGTCAACCACCTCAGACGGGAAACCCACTTCCATCATTTGTAGAACCACTGCAGTTTAATGCCCTTGCCAGTACACCAAAATTGCAACCTCAGAAGCAGATGATTAATAATGCAGACCTCAGCAGGGAGGAGGGATTACAGAATAATTTTAGCTATTCTGCTGCTTCATTCAAATTGGTTGAAGAATTGCCTCAGCTTAAACCCAAGAACTATATGTCAGCTGTGGGTAAGGCTTCTGTTAAAGCTAGATCAGAAACACAAAATGTGGCCAAGGGTGTATCATTTTCACCATTTTTGCAAGTTGATGTACCTGGAAGAAAGACACAAGCTAGTGAAAATTTGTGGGCTGATGACAGCCATAACATGCCTAAGAAAATGTATTCTGATTATGGTCTCACAGGAAGGCAATCGAAAAATAAATCTGTCGTAGGGACCAATAAATATTTGGAAAATAATATAGGGGTGAGCTTTGCCAAAGATTCTGGTGGCAAAAGAAATCCGGGATTTGGAATTGGTCAGTTAATGAAATATCCAAGCTCCATGATGAGATCTGTTGGTGGTTATGATAGTTGTATTTCAGTTGTTAATGAAAAGATGTATGAACCAAATTTTGAATCTACCTTGCCATCAGATACATCGGTGCGGGCAAATATTTTGCATGGTTCACACAATACGTCTTCTCATGGGCTAGAAAATTATGTGATGAATACTCAGACCTCCATTCCATTTAAAGAGATTTTGAAAGGCAATCCCTGTCATGTTTCAGTTTCTGTGTCAAATCAGACTCCGACTTTGCCACAGCAGCAGGCCATTAATAGGGATGCTTATTTTGTTGATGAAAACACGAGGTTGCTTGCTGTGACACAGATACCAGAGTTATCTAAGCAATATCATGCATTGCATTTTAATATGAATCAGAAGCAAGGGGGATCCAGCAGTATTTTGAAATTTCAGCATTATACTTGTGAGGCTTCAACATCTGAACAGGGAACCTCTTGTGCAACATTGAAATTGCCTCAAAATAGGTCGATATTTGGGAATCATGAGAATACTGTTGGTTTAGAGAAGTTGCCTTCCCTCACAGGTATGAACGGATATTATCATTTGTCTGACCTGTCACCAACACCTTTACATTCTAAAGAAAAGGAATCACAATGTAAACATTCTTATGATCTTCAAAACGAAGAGACTTCTTTAAGCCTTGGTATAAACAAAGACAATATCAGATCTAGTGCATGTGAAAAATACTCCGAGCAATCACCAAATATATGTTTGGAAGGCAAGTATCCTTGTCCTGCTCTGATAAACTGTTGCCGAAGCAACTTTTCCTCAGGGATTGAACCCCTTCGTAAGAACCTAGGGCAACAACTTGCTGATGTCAGTGGTGAAACTTCTTTGAAGATGCCTTCAGATTTGTTTAGAAATCTGAATACTTCGAACAATGGAAATATCCACTTTGAGCAAGGTGGGCATGCTCCTCAATGGAGAGATGTGCCCAGTAAGGTCAGGAAAGCAGTTTGTGATGCGACATCTTTAGATCAAACATTTAATGGTTTCGATAAGGAAGCACGAGATGGTTTTCAACTTGGAAACATTTCCACAAAACGCTCCAAAATAACCACTGATATGGGAGACCTGTCAGAAGAGAAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTGATTACTCAGGCATCTGTGATGGTGAACAAAATTGATTACTGTACTGATGAAGCTATAGACACTGGCGTTGTCAACAAGCTCGAAGTCGATGAAGGGTCAGGTATTGATCAAGGCTGCATGTCAGATTTGGTTGAAAGTGAAAGAACCGGTGAGTCTCTAGGCTTGATCTCTGGGAATTATTTGAAAAATGGTTGTTCGAGAGTGTTGAATGATGAATCATGTTGCGATCTACTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGAAAGGAATCAAAATCATTTTGTGCTTTCTGCTAATTGTAAAACCAATCAATCTCAAAAAGTCAAGAGGGGCATCAATGGAAGAAAGCGAAAGAGAAATGTGGTGAAGATTCTAGATGCTTCACTATCTTCTGAATTCCCTTCCTTGTTGCACAATAAGAATAATGAAGATGCTGAGATTTTTAATTCCTCTTCTAGTTTGTCAAAAGAAATGCAAATTTCTCTGCCTAGCCTGCAGAAATCATTTAACAAGTCTTCCTTTGTTCAATCTTGTAACACACGTATACAGTCCGCATTTGCATCTAAATTTGTTTCCTGTAAGAATCGTCTGAGCAAGCATCTCATTCATAAAGTTTCCTATGAGTCTCTATCAGATTCTGATGCTGAGTTTCACTCACTGCCTGTATTTTCTGGAACAAAGAGATTGAGAAAGAATCTCACTTCTGATTTTGAGCAGTTTCATATACAAGAACCATCCTATGAGGAACCTGAAAATGGTAAGTTGAGGCCATTCTTATGCAGAAAGGAAAATGATCATAGAACAAGGCCAGTAGTATGTGGAAAACATGGTGAAATTTGTAAAGAACATTTGGCTAAAGAGGTGCAAAAGCCTGCAAAAATTGTATCCCTCAAGAAGGTCCTTAAGTCTTCCAAAAGGTGTATGAGCCACACAAATGGAAAACCTAGACTAACTTCAAAAAAGCAATGGAAGAAATTGAGCATTGGAACAGATAGTGGGTCCTGCTGTGGGAACCATGGTTTAAAAATTAAAGAACACGGTGAAACACAAACTACAATAATTTATAATAAAGCAAATGTTGATATGTCCCTGGAAGACTTGGAGAGAGGTGGCAAGCAAGATGCTAAAGCTAAAGCTAAGCAGGGTGTTAGGGTTGGAAATAGAGAAAATGTTCGATTGAAGGTGAAGAACAAGGACATTCGAAAACACCGCAGCATTAATGAGCTCACTGCTAAAGAAACCAAAGTGACGGATATGATGAATTGTGCTCAAGACAGAGAGACTGGTTTGTGTAGCCCAAAAAGTAGAAACTCTAGTCAAGGTCACCTAAACATATCTACTATAAACTCAGATACCTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATCAACTGTTTGTTGGAATGTTGTCAATGCCTAATTCGAGTGCACCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAGAAGTCGCTGGTGTTGCAGACCATGCCGGACCAACTCCAAAAATATTGCATGTGTCCTATGTGGATATGGAGGTGGGGCTATGACTCGAGCAGCAACGAGTCATGCGATTGTCAAGAGCCTCCTAAAAGTGTGGAATGGTGAGAAAGATGGCATGCCTAAGCATACAACTTCATGTGAATTTTTTGGAAAGGAAATATATGCATTCCCATCCTCAAAGGCTGGTCAAGAAAGGGTTTTAAAGACAAAAATCCGTGATACATCAACAGATCTGGTGAAAGTTCAAATATCTACAAATCATATGCAGCATACCCTCACTAGTCTTTCTAATTTTAAGGTACACAACAGCATTACTGCAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCGAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCGCGTCCCAGGGCAGATGTGGTTTGTTCCATTTGCAATCGATTCGGTGGTTCTTGTATAGAGTGCAGGGTGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGAAAAGATTGGATTTTATGGAAGATGCATGCTTCATGCTATTGAACCTAGATATCTGTCCATGTACGATCCTATTGATGAAATGGGAAATCAAGAAGAAAAGGAATTCACCTGTGCCAGGGTAGAGGGTTACAAGGGAAGAAGATGGGATGGTTTTCAGGATAATCACTGCCAAGTTGGATGCCTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAACGGGCAGAAATTATGTTCTCAAGGACTCATAAAATTCCCCGATTTGGATATGGAGCATGATTGTCGAAAGGAATACGCACGGTACAAACAAGCAAGGGGATGGAAACACCTTGTTGTGTACAAATCCCGTATACACGGACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTGGTTGAATATGTTGGTGAAATTGTGGGATTGCGTGTGGCTGATAAAAGGGAGAAGGATTATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGGTTTGTTAACCACTCGTGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAAAAGAAGGTTGTCTTCTTTGCTGAGAGGGATATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTTAACCACGAGGACGAAGGAAAGATTCCATGCTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 5886 0.4091 MEGAWQRNCGSPFQPSMSATVSSVSAPEPEMDASYLYPQLAHGLRSKFVGGKQGPVYPSFPLSTTSGSGQTDAGNSFMGLPYGSPSSLRYDFQNMSERKLGMSSGDSTDAIGNSVVDSIESGTFRTSGVGLITENLINCNLQSWVNNFPEISSRAMVGLNNSSNFVFHNIWGSNTATQHTVPCGTKAAESFSFPEWGSPKYATPYMSGCPRVFCMGKSGHLLLSHTGLLGVVCSCHCSHMSVLKFCEHSGLHGGDPGDAVCMESGETIAQWRKLYFLKFGIRSLGNENGWDWPEVLSTTGSPMKSNASVFDMSKTNLSHIFSSSAVMSRKQATTIQDGCNIPLKGFTGISQNSFVDLLKSQLMESNLAMYTTAPNFGGTQLDDGCHPIPPFLDSLKRKVSLSTVHSPLQTPTNLLKDHDCIKPKANGLVGRDAASSNVDLRLGQPPQTGNPLPSFVEPLQFNALASTPKLQPQKQMINNADLSREEGLQNNFSYSAASFKLVEELPQLKPKNYMSAVGKASVKARSETQNVAKGVSFSPFLQVDVPGRKTQASENLWADDSHNMPKKMYSDYGLTGRQSKNKSVVGTNKYLENNIGVSFAKDSGGKRNPGFGIGQLMKYPSSMMRSVGGYDSCISVVNEKMYEPNFESTLPSDTSVRANILHGSHNTSSHGLENYVMNTQTSIPFKEILKGNPCHVSVSVSNQTPTLPQQQAINRDAYFVDENTRLLAVTQIPELSKQYHALHFNMNQKQGGSSSILKFQHYTCEASTSEQGTSCATLKLPQNRSIFGNHENTVGLEKLPSLTGMNGYYHLSDLSPTPLHSKEKESQCKHSYDLQNEETSLSLGINKDNIRSSACEKYSEQSPNICLEGKYPCPALINCCRSNFSSGIEPLRKNLGQQLADVSGETSLKMPSDLFRNLNTSNNGNIHFEQGGHAPQWRDVPSKVRKAVCDATSLDQTFNGFDKEARDGFQLGNISTKRSKITTDMGDLSEEKENSNVSSGCSAPVITQASVMVNKIDYCTDEAIDTGVVNKLEVDEGSGIDQGCMSDLVESERTGESLGLISGNYLKNGCSRVLNDESCCDLLDDLKLLDSLIWKKERNQNHFVLSANCKTNQSQKVKRGINGRKRKRNVVKILDASLSSEFPSLLHNKNNEDAEIFNSSSSLSKEMQISLPSLQKSFNKSSFVQSCNTRIQSAFASKFVSCKNRLSKHLIHKVSYESLSDSDAEFHSLPVFSGTKRLRKNLTSDFEQFHIQEPSYEEPENGKLRPFLCRKENDHRTRPVVCGKHGEICKEHLAKEVQKPAKIVSLKKVLKSSKRCMSHTNGKPRLTSKKQWKKLSIGTDSGSCCGNHGLKIKEHGETQTTIIYNKANVDMSLEDLERGGKQDAKAKAKQGVRVGNRENVRLKVKNKDIRKHRSINELTAKETKVTDMMNCAQDRETGLCSPKSRNSSQGHLNISTINSDTFCCVCRSSSNDKINCLLECCQCLIRVHQACYGVSTLPKRSRWCCRPCRTNSKNIACVLCGYGGGAMTRAATSHAIVKSLLKVWNGEKDGMPKHTTSCEFFGKEIYAFPSSKAGQERVLKTKIRDTSTDLVKVQISTNHMQHTLTSLSNFKVHNSITAGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRFGGSCIECRVADCSVKFHPWCAHQKNLLQSETEGIDDEKIGFYGRCMLHAIEPRYLSMYDPIDEMGNQEEKEFTCARVEGYKGRRWDGFQDNHCQVGCLVPEEQLNAWIHINGQKLCSQGLIKFPDLDMEHDCRKEYARYKQARGWKHLVVYKSRIHGLGLYTSRFISRGEVVVEYVGEIVGLRVADKREKDYQSGKKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN 1961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1175g00008 1961 ProSiteProfiles Extended PHD (ePHD) domain profile. 1606 1720 IPR034732 -
Vium1175g00008 1961 SMART PostSET_3 1945 1961 IPR003616 -
Vium1175g00008 1961 CDD SET_SETD1-like 1808 1957 - -
Vium1175g00008 1961 MobiDBLite consensus disorder prediction 1 20 - -
Vium1175g00008 1961 Pfam PHD-finger 1475 1509 - -
Vium1175g00008 1961 SUPERFAMILY FYVE/PHD zinc finger 1457 1514 IPR011011 -
Vium1175g00008 1961 SMART set_7 1817 1944 IPR001214 GO:0005515
Vium1175g00008 1961 ProSiteProfiles Zinc finger PHD-type profile. 1460 1511 IPR019787 -
Vium1175g00008 1961 ProSiteProfiles Post-SET domain profile. 1945 1961 IPR003616 -
Vium1175g00008 1961 SUPERFAMILY SET domain 1779 1957 IPR046341 -
Vium1175g00008 1961 ProSiteProfiles SET domain profile. 1817 1938 IPR001214 GO:0005515
Vium1175g00008 1961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1448 1516 IPR013083 -
Vium1175g00008 1961 CDD ePHD 1627 1710 - -
Vium1175g00008 1961 Pfam Tify domain binding domain 228 274 IPR032308 -
Vium1175g00008 1961 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 637 1961 - -
Vium1175g00008 1961 Pfam PHD-zinc-finger like domain 1625 1700 - -
Vium1175g00008 1961 SMART PHD_3 1462 1509 IPR001965 -
Vium1175g00008 1961 SMART PHD_3 1664 1720 IPR001965 -
Vium1175g00008 1961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1606 1720 IPR013083 -
Vium1175g00008 1961 Pfam SET domain 1828 1937 IPR001214 GO:0005515
Vium1175g00008 1961 Gene3D SET domain 1729 1961 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1175g00008 Vium-Chr1175 69712 87467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1175g00008 1819 1957 C2H2 Transcription Factor Family AT2G23740 34.591 2.52e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium1175g00008 SET 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1175g00008 - - gmx:100812602 2883.98