Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1175g00002 ATGAAAACGAAGCTTCTTCTTTTGCTTCTCATGCCCCTCCTTATGCTCCACAAACCCATTTGGACTCTTGCCTCTCCATACCCTTTTGCTCCCTCACCTCAAGTTCCACTCTTTTCTCCATTTCCCAATTCAATGTCTGCTTCCTCTCCAGGAATGGTGATGGGGGCTGAACAGCGGCAAATAGATTCGCACAAGAAAATGGTAATTGCCATTGCCATAGCCAGCACTTCGCTTGGTGCAGTCATTTTGAGTGTGTTGTGCATCTGGATTTATCATACCAAGTATCCTTCAAAATCCAAAGGGAAAAACGTTCAAAGATCAGATGCCGAGAAAGGGCTAGCTTCAGCACCAACTCTGAGTAAATTCAGCTCTATAAAGCTGGTTGGTAAGAAAGGGTGTGTTCCAATAATTGATTATAAGCAAATAGAAAAAGCCACCGGCAATTACAAGGAAAGTAACATCTTAGGTGAGGGAGGTTTTGGATGTGTTTACAAAGCACAATTGGATGACAATTTGGAAGTTGCCGTTAAGAAATTGCACTGTGAAAATCCGTGTGCTGAACAAGAATTTGAGAACGAGGTGGAATTGTTAAGTAAAATTCAACATCCAAATGTAATTTCTCTGCTGGGATGTAGCAGTAATGAAGCTACAAGGATTATTGTCTATGAATTGATGCACAATGGATCATTGGAAACTCAATTACATGGACCTTCTCATGGCTCAGCATTGACTTGGCATTTGAGGATGAAGATTGCTCTTGACACAGCAAGGGGATTAAAATATCTGCATGAACACTGTTATCCTGCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAAGTTCAATGCTAAGCTTTCTGATTTTGGCCTTGCCATAACCAATGGGACCCAAAACAAGAATAATATCAAGCTTTCAGGCACGTTGGGTTACGTAGCCCCGGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTATATGCTTTTGGAGTTGTTCTGCTGGAGCTTCTTTTGGGAAAGAAGCCTGTGGAAAAACTAGCACCAGCTCAATGCCAATCCATTGTCACATGGGCCATGCCACAGCTCACAGACAGATCTAAGCTTCCAAACATCGTGGATCCTGTAATTAAGGATACAATGGACCCCAAACACTTGTACCAGGTTGCTGCAGTGGCCGTGCTGTGCGTGCAACCAGAGCCAAGTTACCGTCCCCTAATTGCAGATGTTCTCCACTCACTCATTCCTCTTGTCCCTGTAGAGCTTGGAGGAACACTTAAAGTAGCACAGCTGCCACAGCAAGTATTACCTGCTAACCCACATGAGGATTCTAGTCCATGA 1356 0.427 MKTKLLLLLLMPLLMLHKPIWTLASPYPFAPSPQVPLFSPFPNSMSASSPGMVMGAEQRQIDSHKKMVIAIAIASTSLGAVILSVLCIWIYHTKYPSKSKGKNVQRSDAEKGLASAPTLSKFSSIKLVGKKGCVPIIDYKQIEKATGNYKESNILGEGGFGCVYKAQLDDNLEVAVKKLHCENPCAEQEFENEVELLSKIQHPNVISLLGCSSNEATRIIVYELMHNGSLETQLHGPSHGSALTWHLRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDAKFNAKLSDFGLAITNGTQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGKKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKDTMDPKHLYQVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLKVAQLPQQVLPANPHEDSSP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1175g00002 451 FunFam probable receptor-like protein kinase At1g80640 225 424 - -
Vium1175g00002 451 SUPERFAMILY Protein kinase-like (PK-like) 131 419 IPR011009 -
Vium1175g00002 451 Pfam Protein kinase domain 149 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1175g00002 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Vium1175g00002 451 ProSiteProfiles Protein kinase domain profile. 149 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1175g00002 451 SMART serkin_6 149 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1175g00002 451 ProSitePatterns Protein kinases ATP-binding region signature. 155 178 IPR017441 GO:0005524
Vium1175g00002 451 FunFam Protein kinase superfamily protein 116 224 - -
Vium1175g00002 451 CDD STKc_IRAK 155 422 - -
Vium1175g00002 451 Gene3D Transferase(Phosphotransferase) domain 1 225 424 - -
Vium1175g00002 451 Gene3D Phosphorylase Kinase; domain 1 111 224 - -
Vium1175g00002 451 PANTHER OS01G0750732 PROTEIN 56 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1175g00002 Vium-Chr1175 14687 19644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1175g00002 11 365 Receptor kinase-like Gene Family AT1G80640 47.326 5.59e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vium1175g00002 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1175g00002 - - vra:106764755 864.374