Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11752g00001 ATGATAGAAACCGTACCAAAATCAATGGAGAGCTTTGAAATCCTTGGTGGATGCCTTTTGTTCCTCTCTTTGTTATCCATTTCCTCCACTTTGGACATGATTACTCCGACCCAACCTCTGAGAGATCGTATGAATGAGAATGTAACTCTTGTCTCAACAAATGGAACCTTTGAAGCAGGATTCTTCAGCCCTGGAAATTCCCGTAGCCGTTACCTTGGAATTTGGTACAAAACCATATCCCCCAGAACAGTGGTTTGGGTGGCCAACAAAGAAACACCACTTCAAGACCACTCTGGAGTCTTAGAACTAGACAGTGATCAAGGGTTTCTTAGTATAAAAAATGGCGCAGGAGCCCAAATATGGTCCTCAAATGCATCATCAAACACACCAAGCAAACCAGTTGTCGTGGAGTTGTTGGAATCAGGAAACATGGTTGTGAAAGATGGCCATGATAACTTTTTATGGCAAAGCTTTGATTACCCTGGTGATACTTTTCTTCCAGGAATGAAGCTTGGAATGAACTTGAAAACCGGTCATCACCGAGCTCTGAGATCTTGGAAATCCCTCTACGATCCTACTCCAGGTGAATTTTCATTTGGTGTTGATACTCGTGGCCTTCCTCAACTAGTTATCACGAAGAGTGATGACATAGTTTATAGACCAGGCTCTTGGAATGGTGTTAGAGTCACAGGAGTACCTGCACAAGGATCTCACCCATTAACGAAATCCCTTTTTGTTATGAATGAAGATGAAATCTTCTATGAGATTCAACTCTTGAATAGTTCAACTAAACTGAGAAGCAGATTGCTCCCAGAAGGGTATCAAATACGTTTAATATGGTCAGATGAGGGTGAAAAATGGGATACTGTATACTCTGGTTCGTTTGATGAGTGTGAGAGATATGGTATGTGTGGTGCTAATGCTATTTGCAACGTGAGTGGAGAACCTCAGCACTGCGAATGTTTGAGTGGATTCAAATCCAAAGCTGCGGATTCAACTTGTGATCGAATTAGACCTCTGGATTGCAACAAGGGAGATAGTTTTAAGAAGTACGAGGGAGTGAAATTGCCAGACACATCTTCATCTTGGTATGATACGAGAATGAGTCTTGAGGAATGCGAGAAATTGTGCTTGAGCAACTGCGCTTGTACTGCATATGCTCAATTGAATATCAGTGCCAACGGAAGTGGCTGCTTGCAATGGTTTAATGACATTGTTGACATCAGGACACTAGCAGATGGACAAGATTTTTATCTGCGAATTGCAGCTTCAAAATTTCAAGATCACGCCTTAAACAGGAAGATAGGAGGAATTATACTTGGCTGCACTATATTCATCATCGCCATTGTAGTATTTGGATTCATATTTTGCCTTAGGAGGAATAAACTCAAGCAGTCAGGTGAACCAACCACATTGTCTATGATAGAAACCGTACCAAAATCAATGGAGAGCTTTGAAATCCTTGGTGGATGCCTTTTGTTCCTCTCTTTGTTATCCATTTCCTCCACTTTGGACATGATTACTCCGACCCAACCTCTGAGAGATCGTATGAATGAGAATGTAACTCTTGTCTCAACAAATGGAACCTTTGAAGCAGGATTCTTCAGCCCTGGAAATTCCCGTAGCCGTTACCTTGGAATTTGGTACAAAACCATATCCCCCAGAACAGTGGTTTGGGTGGCCAACAAAGAAACACCACTTCAAGACCACTCTGGAGTCTTAGAACTAGACAGTGATCAAGGGTTTCTTAGTATAAAAAATGGCGCAGGAGCCCAAATATGGTCCTCAAATGCATCATCAAACACACCAAGCAAACCAGTTGTCGTGGAGTTGTTGGAATCAGGAAACATGGTTGTGAAAGATGGCCATGATAACTTTTTATGGCAAAGCTTTGATTACCCTGGTGATACTTTTCTTCCAGGAATGAAGCTTGGAATGAACTTGAAAACCGGTCATCACCGAGCTCTGAGATCTTGGAAATCCCTCTACGATCCTACTCCAGGTGAATTTTCATTTGGTGTTGATACTCGTGGCCTTCCTCAACTAGTTATCACGAAGAGTGATGACATAGTTTATAGACCAGGCTCTTGGAATGGTGTTAGAGTCACAGGAGTACCTGCACAAAGATCTCACCCATTAACGAAATCCCTTTTTGTTATGAATGAAGATGAAATCTTCTATGAGATTCAACTCTTGAATAGTTCAACTAAACTGAGAAGCAGATTGCTCCCAGAAGGGTATCAAATACGTTTAATATGGTCAGATGAGGGTGAAAAATGGGATACTGTATACTCTGGTTCGTTTGATGAGTGTGAGAGATATGGTATGTGTGGTGCTAATGCTATTTGCAACGTGAGTGGAGAACCTCAGCACTGCGAATGTTTGAGTGGATTCAAATCCAAAGCTGCGGATTCAACTTGTGATCGAATTAGACCTCTGGATTGCAACAAGGGAGATAGTTTTAAGAAGTACGAGGGAGTGAAATTGCCAGACACATCTTCATCTTGGTATGATACGAGAATGAGTCTTGAGGAATGCGAGAAATTGTGCTTGAGCAACTGCGCTTGTACTGCATATGCTCAATTGAATATCAGTGCCAACGGAAGTGGCTGCTTGCAATGGTTTAATGACATTGTTGACATCAGGACACTAGCAGATGGACAAGATTTTTATCTGCGAATTGCAGCTTCAAAATTTCAAGATCACGCCTTAAACAGGAAGATAGGAGGAATTATACTTGGCTGCACTATATTCATCATCGCCATTGTAGTATTTGGATTCATATTTTGCCTTAGGAGGAATAAACTCAAGCAGTCAGAAACAGAGTACTGGAAGGAGAAGAATAAGAACGATGACATTGATTTACCAATATTCGATTTTTTATACATCTCCGATGCCACAAATAACTTTTCTGAGAGTAATAAATTGGGACAAGGGGGATTTGGACCAGTGTACAAGGGCATATTATCAGATGGGCAAGAAATTGCAGTTAAGAGGCTTTCCAAAACTTCAGGACAAGGTTTGGACGAGTTTAAGAACGAAGTTATGTTGATTGCAAAACTTCAACACCGCAATCTGGTAAAGCTTCTTGGTTGTTCTTTTGAGCAAGAGGAAAAGCTGCTAATTTATGAATTCATGCCAAATAGAAGCTTGGATTACTTTATTTTTGATTCAATAAGAAGTACATCAATAGGTTGGGCTAAGAGATTTGAAATCATTGATGGAATTGCTAGAGGACTCCTCTATCTTCATCAAGATTCTAGACTGAAAATCATTCATAGGGATCTCAAGACTAGTAATGTTCTTCTTGACAGCAATATGAAACCAAAAATATCAGATTTTGGTATGGCTAGGAAATTTAACCTAGATCAAGATGAAGCAAACACAAATAAAGTGATGGGAACATATGGTTATATGCCTCCCGAATATGCTGTACATGGATCATTTTCAGTCAAATCAGACGTATTTAGTTTTGGCGTAATTGTATTGGAGATAATCAGTGGGAGGAAGAATAGAGGATTTCGTGACCCACACAATGAGCTAAATCTTCTTGGACATGCATGGAGATTATGGATTGAGAAAAGGCCAATGGAACTAATGGATGAATCAATGGACAATGCAGTTGATCCATCTCAAATATTAAGATATATTCATATTGGTTTGTTGTGCGTACAACATAGACCAGAGGATAGGCCAAATATGTCTTCGGTAGTTTTAATGTTGAACGGTGAAAAGTTATTGCCTGAGCCAACTCAACCTGGATTTTACACGGGAAGAAATAACTTGACCATGACAGATTCTTCTTTAAGGAATTTGGATGCGTGTTCTCTCAACGAAATGTCTGAGACATTACTTCTGATACATATGCTTCATTATATGTATATTTTGACAACCCTATATGTCAGATATGATCACGCCTTAAACAGGAAGATAGGAGGAATTATACTTGGCTGCACTATATTCATCATCGCCATTGTAGTATTTGGATTCATATTTTGCCTTAGGAGGAATAAACTCAAGCAGTCAGAAACAGAGTACTGGAAGGAGAAGAATAAGAACGATGACATTGATTTACCAATATTCGATTTTTTATACATCTCCGATGCCACAAATAACTTTTCTGAGAGTAATAAATTGGGACAAGGGGGATTTGGACCAGTGTACAAGGGCATATTATCAGATGGGCAAGAAATTGCAGTTAAGAGGCTTTCCAAAACTTCAGGACAAGGTTTGGACGAGTTTAAGAACGAAGTAATGTTGATTGCAAAACTTCAACACCGCAATCTGGTAAAGCTTCTTGGTTGTTCTTTTGAGCAAGAGGAAAAGCTGCTAATTTATGAATTCATGCCAAATAGAAGCTTGGATTACTTTATTTTTGATTCAATAAGAAGTACATCAATAGGTTGGGCTAAGAGATTTGAAATCATTGATGGAATTGCTAGAGGACTCCTCTATCTTCATCAAGATTCTAGACTGAAAATCATTCATAGGGATCTCAAGACTAGTAATGTTCTTCTTGACAGCAATATGAAACCAAAGATATCAGATTTTGGTATGGCTAGGACATTTAACCTAGATCAAGATGAAGCAAACACAAATAAAGTGATGGGAACATATGGTTATATGCCTCCCGAATATGCTGTACATGGATCATTTTCAGTCAAATCAGACGTATTTAGTTTTGGCGTAATTGTATTGGAGATAATCAGTGGGAGGAAGAATAGAGGATTTCGTGACCCACACAATGAGCTAAATCTTCTTGGACATGCATGGAGATTATGGATTGAGAAAAGGCCAATGGAACTAATGGATGAATCAATGGACAATGCAGTTGATCCATCTCAAATATTAAGATATATTCATATTGGTTTGTTGTGCGTACAACATAGACCAGAGGATAGGCCAAATATGTCTTCGGTAGTTTTAATGTTGAACGGTGAAAAGTTATTGCCTGAGCCAACTCAACCTGGATTTTACACGGGAAGAAATAACTTGACCATGACAGATTCTTCTTTAAGGAATTTGGATGCGTGTTCTCTCAACGAAATGTCTGAGACATTACTTCTGGCAAGATAG 5076 0.3946 MIETVPKSMESFEILGGCLLFLSLLSISSTLDMITPTQPLRDRMNENVTLVSTNGTFEAGFFSPGNSRSRYLGIWYKTISPRTVVWVANKETPLQDHSGVLELDSDQGFLSIKNGAGAQIWSSNASSNTPSKPVVVELLESGNMVVKDGHDNFLWQSFDYPGDTFLPGMKLGMNLKTGHHRALRSWKSLYDPTPGEFSFGVDTRGLPQLVITKSDDIVYRPGSWNGVRVTGVPAQGSHPLTKSLFVMNEDEIFYEIQLLNSSTKLRSRLLPEGYQIRLIWSDEGEKWDTVYSGSFDECERYGMCGANAICNVSGEPQHCECLSGFKSKAADSTCDRIRPLDCNKGDSFKKYEGVKLPDTSSSWYDTRMSLEECEKLCLSNCACTAYAQLNISANGSGCLQWFNDIVDIRTLADGQDFYLRIAASKFQDHALNRKIGGIILGCTIFIIAIVVFGFIFCLRRNKLKQSGEPTTLSMIETVPKSMESFEILGGCLLFLSLLSISSTLDMITPTQPLRDRMNENVTLVSTNGTFEAGFFSPGNSRSRYLGIWYKTISPRTVVWVANKETPLQDHSGVLELDSDQGFLSIKNGAGAQIWSSNASSNTPSKPVVVELLESGNMVVKDGHDNFLWQSFDYPGDTFLPGMKLGMNLKTGHHRALRSWKSLYDPTPGEFSFGVDTRGLPQLVITKSDDIVYRPGSWNGVRVTGVPAQRSHPLTKSLFVMNEDEIFYEIQLLNSSTKLRSRLLPEGYQIRLIWSDEGEKWDTVYSGSFDECERYGMCGANAICNVSGEPQHCECLSGFKSKAADSTCDRIRPLDCNKGDSFKKYEGVKLPDTSSSWYDTRMSLEECEKLCLSNCACTAYAQLNISANGSGCLQWFNDIVDIRTLADGQDFYLRIAASKFQDHALNRKIGGIILGCTIFIIAIVVFGFIFCLRRNKLKQSETEYWKEKNKNDDIDLPIFDFLYISDATNNFSESNKLGQGGFGPVYKGILSDGQEIAVKRLSKTSGQGLDEFKNEVMLIAKLQHRNLVKLLGCSFEQEEKLLIYEFMPNRSLDYFIFDSIRSTSIGWAKRFEIIDGIARGLLYLHQDSRLKIIHRDLKTSNVLLDSNMKPKISDFGMARKFNLDQDEANTNKVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIVLEIISGRKNRGFRDPHNELNLLGHAWRLWIEKRPMELMDESMDNAVDPSQILRYIHIGLLCVQHRPEDRPNMSSVVLMLNGEKLLPEPTQPGFYTGRNNLTMTDSSLRNLDACSLNEMSETLLLIHMLHYMYILTTLYVRYDHALNRKIGGIILGCTIFIIAIVVFGFIFCLRRNKLKQSETEYWKEKNKNDDIDLPIFDFLYISDATNNFSESNKLGQGGFGPVYKGILSDGQEIAVKRLSKTSGQGLDEFKNEVMLIAKLQHRNLVKLLGCSFEQEEKLLIYEFMPNRSLDYFIFDSIRSTSIGWAKRFEIIDGIARGLLYLHQDSRLKIIHRDLKTSNVLLDSNMKPKISDFGMARTFNLDQDEANTNKVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIVLEIISGRKNRGFRDPHNELNLLGHAWRLWIEKRPMELMDESMDNAVDPSQILRYIHIGLLCVQHRPEDRPNMSSVVLMLNGEKLLPEPTQPGFYTGRNNLTMTDSSLRNLDACSLNEMSETLLLAR 1691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11752g00001 1691 Pfam PAN-like domain 815 881 IPR003609 -
Vium11752g00001 1691 Pfam PAN-like domain 342 408 IPR003609 -
Vium11752g00001 1691 Pfam D-mannose binding lectin 83 187 IPR001480 -
Vium11752g00001 1691 Pfam D-mannose binding lectin 556 660 IPR001480 -
Vium11752g00001 1691 SUPERFAMILY Protein kinase-like (PK-like) 955 1241 IPR011009 -
Vium11752g00001 1691 ProSiteProfiles Bulb-type lectin domain profile. 508 632 IPR001480 -
Vium11752g00001 1691 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 492 1228 - -
Vium11752g00001 1691 SUPERFAMILY alpha-D-mannose-specific plant lectins 557 665 IPR036426 -
Vium11752g00001 1691 ProSiteProfiles Protein kinase domain profile. 970 1247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11752g00001 1691 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 158 - -
Vium11752g00001 1691 ProSiteProfiles EGF-like domain profile. 767 804 IPR000742 -
Vium11752g00001 1691 SUPERFAMILY Protein kinase-like (PK-like) 1358 1644 IPR011009 -
Vium11752g00001 1691 Gene3D Phosphorylase Kinase; domain 1 1346 1448 - -
Vium11752g00001 1691 Gene3D Phosphorylase Kinase; domain 1 943 1045 - -
Vium11752g00001 1691 ProSiteProfiles PAN/Apple domain profile. 815 895 IPR003609 -
Vium11752g00001 1691 Pfam Protein tyrosine and serine/threonine kinase 1376 1642 IPR001245 GO:0004672|GO:0006468
Vium11752g00001 1691 Pfam Protein tyrosine and serine/threonine kinase 973 1239 IPR001245 GO:0004672|GO:0006468
Vium11752g00001 1691 Gene3D - 502 631 IPR036426 -
Vium11752g00001 1691 Gene3D - 29 158 IPR036426 -
Vium11752g00001 1691 CDD STKc_IRAK 1379 1646 - -
Vium11752g00001 1691 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 1338 1448 - -
Vium11752g00001 1691 CDD STKc_IRAK 976 1243 - -
Vium11752g00001 1691 Gene3D Transferase(Phosphotransferase) domain 1 1046 1247 - -
Vium11752g00001 1691 Gene3D Transferase(Phosphotransferase) domain 1 1449 1650 - -
Vium11752g00001 1691 Pfam S-locus glycoprotein domain 692 801 IPR000858 GO:0048544
Vium11752g00001 1691 Pfam S-locus glycoprotein domain 219 328 IPR000858 GO:0048544
Vium11752g00001 1691 ProSiteProfiles EGF-like domain profile. 294 331 IPR000742 -
Vium11752g00001 1691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1091 1103 IPR008271 GO:0004672|GO:0006468
Vium11752g00001 1691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1494 1506 IPR008271 GO:0004672|GO:0006468
Vium11752g00001 1691 Gene3D Hepatocyte Growth Factor 812 894 - -
Vium11752g00001 1691 Gene3D Hepatocyte Growth Factor 339 421 - -
Vium11752g00001 1691 SMART ntp_6 343 421 IPR003609 -
Vium11752g00001 1691 SMART ntp_6 816 894 IPR003609 -
Vium11752g00001 1691 SMART serkin_6 970 1239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11752g00001 1691 SMART serkin_6 1373 1642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11752g00001 1691 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1046 1249 - -
Vium11752g00001 1691 ProSiteProfiles Protein kinase domain profile. 1373 1650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11752g00001 1691 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
Vium11752g00001 1691 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1449 1652 - -
Vium11752g00001 1691 CDD PAN_AP_plant 812 895 - -
Vium11752g00001 1691 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 935 1045 - -
Vium11752g00001 1691 ProSiteProfiles Bulb-type lectin domain profile. 35 159 IPR001480 -
Vium11752g00001 1691 SMART blect_4 41 161 IPR001480 -
Vium11752g00001 1691 SMART blect_4 514 634 IPR001480 -
Vium11752g00001 1691 CDD PAN_AP_plant 339 422 - -
Vium11752g00001 1691 CDD B_lectin 47 161 IPR001480 -
Vium11752g00001 1691 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 192 IPR036426 -
Vium11752g00001 1691 CDD B_lectin 520 634 IPR001480 -
Vium11752g00001 1691 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 499 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11752g00001 Vium-Chr11752 8935 21622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11752g00001 1312 1659 Receptor kinase-like Gene Family AT4G23190 52.528 2.83e-121 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium11752g00001 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11752g00001 - - vum:124820888 3378.19