Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11743g00011 ATGGAAAAGTATGAGGCTGTCAAGGATTTGGGGGCTGGGAATTTTGGGGTGGCCAGGCTCATGAGGAACAAGGAGACCAAGGAGCTTGTTGCCATGAAATACATCGAGCGTGGTCAAAAGATTGACGAGAATGTGGCAAGAGAGATTATCAACCACAGATCCCTTCGGCACCCCAATATCATTCGCTTCAAGGAGGTGGTTTTGACGCCCACTCATTTGGCCATAGTGATGGAGTATGCAGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTTATTTCTGGTGTGCACTACTGTCATGCCATGCAAATTTGCCACAGAGATTTGAAGTTAGAAAACACACTTTTAGATGGTAGCCCTGCACCCCGCTTGAAAATTTGTGACTTTGGCTATTCCAAGTCATCTCTGCTTCATTCACGACCCAAATCAACTGTTGGAACTCCAGCTTATATAGCACCAGAGGTTCTTTCCAGGAGGGAGTATGATGGGAAGTTGGCTGATGTATGGTCATGTGGAGTGACTCTTTATGTGATGCTGGTTGGAGCTTACCCTTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGAATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGACTGCAGACACCTCCTTTCTCGTATATTTGTAGCAAATCCATTAAGGAGAATCTCCCTTAAGGAAATTAAGAACCACCCATGGTTTTTGAAGAATCTTCCAAGAGAGCTAACTGAATCAGCTCAAGCTGTCTATTACCAGAGAGGCAACCCAAGTTTTTCTGTTCAAAGTGTGGAGGAGATAATGAAAATTGTGGGAGAAGCAAGGGACCCTCCTCCGGTTTCTAGGCCTCTCAAAGGTTTTGGCTGGGACGGTGAAGAAGAGGAAGGGGAAGAAGATGTGGAGGAAGAGGAGGATGAAGAAGATGAATATGACAAGAGGGTGAAGGAAGTTCATGCCAGTGGAGAATTTCAAATCAGTTAA 1056 0.446 MEKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGQKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRISLKEIKNHPWFLKNLPRELTESAQAVYYQRGNPSFSVQSVEEIMKIVGEARDPPPVSRPLKGFGWDGEEEEGEEDVEEEEDEEDEYDKRVKEVHASGEFQIS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11743g00011 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vium11743g00011 351 MobiDBLite consensus disorder prediction 300 351 - -
Vium11743g00011 351 SUPERFAMILY Protein kinase-like (PK-like) 2 292 IPR011009 -
Vium11743g00011 351 Coils Coil 318 345 - -
Vium11743g00011 351 PANTHER SERINE/THREONINE KINASE 2 295 - -
Vium11743g00011 351 MobiDBLite consensus disorder prediction 316 335 - -
Vium11743g00011 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vium11743g00011 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11743g00011 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vium11743g00011 351 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vium11743g00011 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium11743g00011 351 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Vium11743g00011 351 CDD STKc_SnRK2 3 259 - -
Vium11743g00011 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11743g00011 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11743g00011 Vium-Chr11743 70069 73972 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11743g00011 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.593 4.44e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium11743g00011 Pkinase 5.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11743g00011 K14498 - gmx:547968 669.848