Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11743g00005 ATGGCCTTAGCCATGGTTCGTAGGAATGTCATCACCCACTACTCCAAGTTTGCATCTTCTTGGTCTGTGTTGTCTCGCCATTCCTCAATCCACAACCCTTCCTTGGCGTCTGTTTCTCCGTTTCATAGCCAATCTGTTGGTGGTGGTGGTGGTGGTGGTGGAGGATTGCCATCTTACATGCGTGGAGCTGTGTATTGGGAAACTAATAAGCCTCTGTCAATCGAGGAGTTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAGGCCTGTGGAGTATGCCACTCTGATCTGCATGTTATAAAGGGTGAAATTCCGTTTTCCAGTCCTTGTGTTCTGGGGCATGAGATTACCGGTGAGGTTGTTGAACACGGACCACACTCTGACAGCAAGACAATTGAAAGGCTTCCAGTAGGGTCCCGAGTTGTTGGGTCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCACGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTAGACTATTTCTTCGAAACAGTGGAAAACCAGTATACATGTACAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGGCTGTACTACCAGAATCATTGCCATATCCACAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTATGGTGCTATGGCTCACGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCCTTTGGTGCTTCGGAAATAATTGCTGTGGATGTTCAGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATAAATGAAATTACTGGTGGAAAGGGTGTTGATGTAGCTGTGGAAGCCTTAGGGAAACCACAAACATTTGCTCAGTGCACACTAAGTGTGAAGGATGGTGGAAAAGCCGTAATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCGTATGGAGGCAGGGCGAGGCAAGATCTTCCAAAACTAATTAGATTGGCAGAAACAGGTATCTTCAATCTTGACCATGCTGTTTCTAGAACATACACCTTTGAGGATTCAGCCAAAGCATTCCAAGATCTTAATGAAGGAAAAATCATTGGTCGAGCTGTGATCGAGATAATGTAA 1296 0.456 MALAMVRRNVITHYSKFASSWSVLSRHSSIHNPSLASVSPFHSQSVGGGGGGGGGLPSYMRGAVYWETNKPLSIEEFHMPRPKAGEVLIKTKACGVCHSDLHVIKGEIPFSSPCVLGHEITGEVVEHGPHSDSKTIERLPVGSRVVGSFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRNSGKPVYMYSMGGLAEYCVVPANGVAVLPESLPYPQSAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASEIIAVDVQDEKLQKAKTFGATHTVNSAKEDPIEKINEITGGKGVDVAVEALGKPQTFAQCTLSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLDHAVSRTYTFEDSAKAFQDLNEGKIIGRAVIEIM 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11743g00005 431 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 59 428 - -
Vium11743g00005 431 Pfam Zinc-binding dehydrogenase 260 391 IPR013149 -
Vium11743g00005 431 SUPERFAMILY GroES-like 58 256 IPR011032 -
Vium11743g00005 431 FunFam Alcohol dehydrogenase (Zinc) 64 251 - -
Vium11743g00005 431 Pfam Alcohol dehydrogenase GroES-like domain 85 215 IPR013154 -
Vium11743g00005 431 SMART PKS_ER_names_mod 67 428 IPR020843 GO:0016491
Vium11743g00005 431 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 222 395 IPR036291 -
Vium11743g00005 431 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 117 131 IPR002328 GO:0008270|GO:0016491
Vium11743g00005 431 Gene3D - 64 420 - -
Vium11743g00005 431 Gene3D - 237 374 - -
Vium11743g00005 431 CDD Zn_ADH10 60 429 - -
Vium11743g00005 431 FunFam Sorbitol dehydrogenase 237 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11743g00005 Vium-Chr11743 27099 30912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11743g00005 77 381 Monolignol Biosynthesis Gene Families AT4G37990 27.010 4.54e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11743g00005 - - gmx:100775182 776.163