Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11743g00004 ATGCCTCTTCTAAGGAGAAAGCCTTTTGCCTTGGCTGAGCCCCCTGAGGAATTGAAGCCAGACGAGCTTGTTTACCAAATTCGATTTACAAAAGAAATCTTTCGAGATTATCCTGATTATTTGAAGCGATTGAATCAATACCGTCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCCATAGTGTCTGAACAACATGCTACTGAGAAAGTTCAACAGTTTCCTAAGGAATTAATGACTACTGCTTTAGGGATTATTCAATACAGCACGCTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAAAAATTGCAGAAACGTTTGTTTGTCGGTGCTGAACTACATGGGAAAAAGGGTGATGAAGTACATCCATGCAGAATATTAAAAGTAATTCAGAAAGGAGTTGACACATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAAAATATAAGTGAACAAGCTGAACTCTGTGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTCATTCGGGAATCTACATGCCAGAATGCCCCATGGGTTTTACATGATGAACTAGCAAAAAGTTATGGAATATCAACTGACATTCCTGAAGAATTAAGAGGGAGGGTTTTTTACAGAGATGGACTTCTAATTTGTTCCAAGAAAAGGAAAAATGAGGAATCACTGGAAGACACTGATAACAGTAAAAGGAAGAAGTTGGATGGGGCACAAGTTGATGATTCTTGCCAAGAGAAAGAAAATGCTCAACAGAAGAATGAAGCTATCAAATACCCAATTGATGATCTCTTGGTGAAACCTGGTCCGGATGATCCTGTTTTCACTGATCGTCCTTCTCCATCAAAAGACTTCAACATTCCAATGAGTTGTGTTGGGGATCTCTTAATGGTTTGGGATTTGCTTAATTCCTTTGGTCGACTGTTGCACCTGTGGCCTTACTCTCTAGAAGATTTTGAAAATGCAATCTGTCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGATTTCTCATCAAAGATGATGATGAATACTCTTCGGCTGTGAAGAACCGAAAGTTAAAGTCTAAGATTACAATGAATAATTGGACTGAATATTTATGCTATTTCCTAGAGGTGATCAATATTCCTGAACTGCGGCACCATGAAGCAACTATAAAACGGGGACATTATGGCCTTGTAGATGTCAGTGCCAAATTAGAAATCTTATCCAAATTGGTCAACCAAGCCCTTGAAACTGCAATTTTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCTCTAGAAGGGAAGAAGCATTGGAAAAGGGTAGGAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCCAGAAGCAATGGATTTGTGGATGGGCTTCTGAGTGGTGCTAAAGTCCCAACGAATGATAATCATGGTATACAAAATGGAGACATGGATGAGAAAAGTCTTATAGAGGTAGAACCAACTGGGCAAAACAGACAATTGGATAGAAGTGAGATCAAGCCTTTAAATTCTGTTTCAAAAAAGACGCATAAGAAGCTAAATTCAGAGCTGAAAGAACCAACTAAAAATGGAGACATGGATGAGAAAAGTCTTGTAGAGGTAGCACCAACTGGGCAAAACAGACAATTGGATAGAAGTGAGATCAAGCCTTTAAATTCTGTTTCAAAAAAGACCCATAAGAGGCTAAATTCAGAGCTGAAAGAACCAACTAAAAATGGAAAAGAATTGTCCAGAAAGGAATCACCAAAACAGTCGAAAGCTGATAAGGAGGATCTGTCAGAGAAGAATAGTGAAGAACAGAGGAAAGAATATTTCGAAAAGGAGATGGAGAAACGATTTGTTCGTAGAAGTCCTTTAGGTAAAGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGAGATGGGAGGATATTTGTTGAAAGCTCTGACTCCAAGGAATGGGGATACTACAGCAGTAAGGAAGAGCTCGATGCATTGATGAGTTCACTAAATTGCAAGGGTGAGCGGGAAAGGGCACTGCAAAAGCAACTACAAAAATATTATACTAAAATATGCTCAGAACTCCAGAAAAGGTCAAAGGATTTGATGCACAGGATTATAGATGAATCTGTACTTCGTAGGTCTACTCGTGTTAGAGCTCCACCTAGACAGAATCCTGCCAATGCTTTCCTCAGATATATTAACAAGTGGAAAGAAGAATAG 2283 0.3951 MPLLRRKPFALAEPPEELKPDELVYQIRFTKEIFRDYPDYLKRLNQYRQRVWMCKVTGKTGLTYEEAIVSEQHATEKVQQFPKELMTTALGIIQYSTLPLKDLADSIGEKLQKRLFVGAELHGKKGDEVHPCRILKVIQKGVDTFCYEVAWLDKNKNISEQAELCAEDLVHKKPLFSRNILKSFIRESTCQNAPWVLHDELAKSYGISTDIPEELRGRVFYRDGLLICSKKRKNEESLEDTDNSKRKKLDGAQVDDSCQEKENAQQKNEAIKYPIDDLLVKPGPDDPVFTDRPSPSKDFNIPMSCVGDLLMVWDLLNSFGRLLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRFLIKDDDEYSSAVKNRKLKSKITMNNWTEYLCYFLEVINIPELRHHEATIKRGHYGLVDVSAKLEILSKLVNQALETAIFREKLDEIIEQRQALGASRREEALEKGRRRREEKERLKAESRSNGFVDGLLSGAKVPTNDNHGIQNGDMDEKSLIEVEPTGQNRQLDRSEIKPLNSVSKKTHKKLNSELKEPTKNGDMDEKSLVEVAPTGQNRQLDRSEIKPLNSVSKKTHKRLNSELKEPTKNGKELSRKESPKQSKADKEDLSEKNSEEQRKEYFEKEMEKRFVRRSPLGKDRDYNRYWWFRRDGRIFVESSDSKEWGYYSSKEELDALMSSLNCKGERERALQKQLQKYYTKICSELQKRSKDLMHRIIDESVLRRSTRVRAPPRQNPANAFLRYINKWKEE 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11743g00004 760 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Vium11743g00004 760 Coils Coil 455 475 - -
Vium11743g00004 760 Pfam DDT domain 304 361 IPR018501 -
Vium11743g00004 760 MobiDBLite consensus disorder prediction 454 477 - -
Vium11743g00004 760 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 642 707 IPR028941 -
Vium11743g00004 760 MobiDBLite consensus disorder prediction 562 576 - -
Vium11743g00004 760 MobiDBLite consensus disorder prediction 237 266 - -
Vium11743g00004 760 ProSiteProfiles WAC domain profile. 22 128 IPR013136 -
Vium11743g00004 760 SMART testlast3 303 364 IPR018501 -
Vium11743g00004 760 MobiDBLite consensus disorder prediction 513 527 - -
Vium11743g00004 760 MobiDBLite consensus disorder prediction 528 556 - -
Vium11743g00004 760 MobiDBLite consensus disorder prediction 454 630 - -
Vium11743g00004 760 MobiDBLite consensus disorder prediction 577 630 - -
Vium11743g00004 760 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 758 - -
Vium11743g00004 760 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11743g00004 Vium-Chr11743 18497 24800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11743g00004 574 706 Homeobox Transcription Factor Family AT1G28420 32.394 2.41e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium11743g00004 WAC_Acf1_DNA_bd 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11743g00004 - - var:108323886 1498.8