Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11735g00001 ATGACGGAGGTGGCAAGATCAGTGGTGCACGACGTTTTGGGACAAAGAGTCGTCGACGTAGACCAACCAATTGTCGATTACATTGTCAACGTCCTCGCAGACGATGACTTCGACTTTGGCCTCGACGGCGAAGGCGCATTCGAAGCCCTCGGCGAGCTCCTCGTTGCCGCCGGCTGCGTCGACGATTTCTCCGAGTGCCGCTCTGTGTGCAGCACGTTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGCGAAACCCGCTGTGCGGAGCCTGGCGGCGCCGTTTCGAATGAATGAAGGTTTGGACGACGTCCAAGCTCCCAAGAAGAAGCCCGAGCCTGTCGACGGCCCTCTGTTATCGGAACGTGACCGTCTAAAGCTTGAGAGAAGGAAGCGCAAGGATGAACGTCAGCGAGAGGCACAATACCAAATGCACTTGGCGGAGATGGAGGCGGCACGAGCAGGTATGCCATTGGTGTGTGTGAGGCATGAGAGCGCTGGGGGACCAAACGTGAAGGACATTCACATGGAGAATTTCAATATCTCGGTTGGTGGGCGGGATCTAATTGTTGATGGTTGTGTCACACTTTCGTTTGGAAGGCATTATGGTTTGGTAGGAAGGAACGGGACAGGAAAAACCACTTTTCTTAGACACATGGCTATGCAAGCCATCGATGGTGTTCCAAGGAATTGTCAAATATTGCACGTGGAGCAAGAGGTGACAGGTGATGATACCACAGCCTTGCAGTGTGTCCTCAACTCTGACATTGAGAGGACTCAACTTATCGAAGAAGAAGCTCAGTTAGTTGCCCAACAGAGGGAATTTGAGGACAAAATTGAAAAGGGTGACTCAAATGGAATGGTTGGCAGGGATAGCATTTCACAGAGGCTTGAGGAAATATATAAGAGGCTTGAACACATTGATGCTGATTCTGCAGAGGCACGAGCAGCATCTATATTAGCTGGTTTGAGTTTCTCTCCTGAGATGCAGAAGAAGGCAACAAAAACATTTTCAGGAGGATGGCGGATGCGCATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAGTCATACTTAGTTAAATGGCCAAAAACATTTATTGTTGTTTCACATGCGAGAGAATTTTTAAACACGGTGGTTACTGATATAATTCACTTGCAAAACCAAAAGTTGACTACTTATAAAGGAAATTATGATACTTTTGAGAGGACCCGAGAAGAACAAATTAAAAATCAGCAGAAAGCATTGGAGGCAAATGAGCGTGCAAGATCTCATATGCAGGTATTATGA 1353 0.4775 MTEVARSVVHDVLGQRVVDVDQPIVDYIVNVLADDDFDFGLDGEGAFEALGELLVAAGCVDDFSECRSVCSTLCDKFGKHGLVKAKPAVRSLAAPFRMNEGLDDVQAPKKKPEPVDGPLLSERDRLKLERRKRKDERQREAQYQMHLAEMEAARAGMPLVCVRHESAGGPNVKDIHMENFNISVGGRDLIVDGCVTLSFGRHYGLVGRNGTGKTTFLRHMAMQAIDGVPRNCQILHVEQEVTGDDTTALQCVLNSDIERTQLIEEEAQLVAQQREFEDKIEKGDSNGMVGRDSISQRLEEIYKRLEHIDADSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDTFERTREEQIKNQQKALEANERARSHMQVL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11735g00001 450 MobiDBLite consensus disorder prediction 103 140 - -
Vium11735g00001 450 FunFam ABC transporter F family member 3 127 447 - -
Vium11735g00001 450 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 157 448 - -
Vium11735g00001 450 SMART AAA_5 199 411 IPR003593 GO:0016887
Vium11735g00001 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 432 IPR027417 -
Vium11735g00001 450 Pfam ABC transporter 405 448 IPR032781 -
Vium11735g00001 450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 434 IPR003439 GO:0005524
Vium11735g00001 450 CDD ABCF_EF-3 175 411 - -
Vium11735g00001 450 Pfam ABC transporter 195 366 IPR003439 GO:0005524
Vium11735g00001 450 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524|GO:0016887
Vium11735g00001 450 Gene3D - 125 447 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11735g00001 Vium-Chr11735 5312 8204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11735g00001 175 369 Calmodulin-binding Proteins AT2G36910 26.368 5.25e-06 47.4