Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11730g00001 ATGGCAACTCCAAGTTCCCGTAGATTCACGTACAATGTGTTCCTCAGTTTTAGAGGGAAAGACACGCGTTCTGGTTTCACTGGTTATCTCTACGATGCTCTCTGTGACAAGGGAGTTCACACTTTCATGGATGATGAGGAACTTCAAAGCGGAGAGGAAATCACACCAGCGCTTCAGAAAGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCTTTCTGCTTGGATGAACTTGCAACTATAATTCACTGCCAGAGTAAAGGACTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTAATGTCAGACATCAGAAAGGTAGCTATGAAGAAGCACTGGCTAAGCATCAAAAGAGGTTCAAAGGGCAGGAGGAGAAGTTAAATAAATGGAAAATGGCTCTGCGTCAAGTTGGTGACTTGTCTGGCTATCACTTGGGAGATGGGAATGAATACGAGTACAAGTTTATTGAGAGCATTGTTAAACGGGTTTCCAGGGTGATTAATCGTGTTCCTTTACATGTTGTGGATTACCCAGTTGGCCTATCCGCACGGGTGCTGAAAGTCAAGAAACTTTTGGATGTTGGATCGGATGGTGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTGCTCTAGCAGTTTATAATTCCATTGCTGATGATTTTGATCAATCATGTTTTCTTCTAAATGTAAGAGAAGAATCAAATAAACATGAGTTAAAAGACCTCCAAAGCATCCTTCTTTCAAAAATGCTTAGAGAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGGAGAGGCTGGGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAACAGAGAGCAGTTACAAGCATTTGCTGGAAGAGCTGATTGGTTTGGTCCCGGCAGCAGGGTTATCATTACCACTCGAGACAAACAGCTGCTAAAATCTTATGAGATTGAAAGAACTTATGAGGTGGAGGAATTGAATGAGAATGATTCTCTTAAATTGCTTATATGGAATGCTTTCAAAAGGGAAAATGTTGATCCAAGTTACCAGGACGTGTTGAAACGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCAAACGGTGAAATTCTAGAGATACTTAAAGTAAGCTATGATGCTTTGGGGAAAGAAGAACAAAGTGTCTTTCTTGACATCGCCTGTTTCTTTAAAGGAAGTAGTTTGGAAGAAGTTGAACATATACTTCGTGTTCTTTATGATCACAGCATGAAACATCATATTGGGGTGTTGGTGGATAAATCTCTCATAAAGGTTTTGTGGGATGACGAAGGGTTTGGTGAAATTGAAATGCACGACTTGATTGAGGACATGGGTAGACATATTGACCGGCAAAAGTCACCCGAAAAGCCAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCCTTCATGTTTTAAAACACAACAAGGGAACTGGGAAAACTGAAATCATACGCCTGGATTTGTCTATATCTGAGAGAGAAGAAACGCTAGAATGGAATCCCAACGCCTTCAGAAGAATGAAAAACCTTAAAATGCTTATCATTAGAAATGGTAAATTTTCCGAAGGTCCCAGTTACTTTCCGAAAAGTTTGAGAGTACTGGAATGGCATGCATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAGCAAACTTGTGACATGCATGTTACCTTACGGTCAGTTTACGTCATTTGGATTCCTTGGCTCATCAAAGGCAAGCTTAAAGAGTGTTTTCCTCATCTTGTAA 1914 0.4044 MATPSSRRFTYNVFLSFRGKDTRSGFTGYLYDALCDKGVHTFMDDEELQSGEEITPALQKAIEESRIAIVVLSHNYASSSFCLDELATIIHCQSKGLLVIPVFYKVDPSNVRHQKGSYEEALAKHQKRFKGQEEKLNKWKMALRQVGDLSGYHLGDGNEYEYKFIESIVKRVSRVINRVPLHVVDYPVGLSARVLKVKKLLDVGSDGVVHMIGIHGMGGLGKTTLALAVYNSIADDFDQSCFLLNVREESNKHELKDLQSILLSKMLREKNIILTSWQEGASMIQERLGRKKVLLILDDVDNREQLQAFAGRADWFGPGSRVIITTRDKQLLKSYEIERTYEVEELNENDSLKLLIWNAFKRENVDPSYQDVLKRVVTYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPNGEILEILKVSYDALGKEEQSVFLDIACFFKGSSLEEVEHILRVLYDHSMKHHIGVLVDKSLIKVLWDDEGFGEIEMHDLIEDMGRHIDRQKSPEKPGKRRRLWLGKDILHVLKHNKGTGKTEIIRLDLSISEREETLEWNPNAFRRMKNLKMLIIRNGKFSEGPSYFPKSLRVLEWHAYPSNCLPSNFDPSKLVTCMLPYGQFTSFGFLGSSKASLKSVFLIL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11730g00001 637 PRINTS Disease resistance protein signature 559 575 - -
Vium11730g00001 637 PRINTS Disease resistance protein signature 287 301 - -
Vium11730g00001 637 PRINTS Disease resistance protein signature 211 226 - -
Vium11730g00001 637 PRINTS Disease resistance protein signature 380 394 - -
Vium11730g00001 637 Gene3D - 9 177 IPR035897 -
Vium11730g00001 637 Pfam TIR domain 11 173 IPR000157 GO:0007165
Vium11730g00001 637 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 630 IPR044974 GO:0006952
Vium11730g00001 637 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Vium11730g00001 637 SMART till_3 10 149 IPR000157 GO:0007165
Vium11730g00001 637 Gene3D - 345 429 IPR042197 -
Vium11730g00001 637 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Vium11730g00001 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 439 IPR027417 -
Vium11730g00001 637 SUPERFAMILY "Winged helix" DNA-binding domain 416 527 IPR036390 -
Vium11730g00001 637 Pfam NB-ARC domain 195 415 IPR002182 GO:0043531
Vium11730g00001 637 Coils Coil 122 142 - -
Vium11730g00001 637 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vium11730g00001 637 Gene3D - 178 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11730g00001 Vium-Chr11730 327 2606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11730g00001 11 613 WRKY Transcription Factor Family AT4G12020 28.849 5.04e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11730g00001 - - var:108344036 1023.85