Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11728g00013 ATGAACGACGCAGATGTCTCTAAGCAAATCCAGCAGATGGTGCGGTTCATCCGCCAGGAAGCAGAGGAAAAAGCTAACGAGATCTCTGTCTCCGCCGAAGAGGAATTCAATATCGAGAAGCTACAGTTAGTTGAAGCCGAAAAGAAGAAGATCAGGCAAGAGTACGAACGAAAAGAGCGTCAAGTCGAAATTCGGAAGAAGATTGAGTACTCGATGCAGCTGAATGCCTCTCGAATTAAAGTTCTTCAAGCTCAAGATGATGTGATCAGTTCCATGAAAGAAGCTGCTTCCAAGGAACTTTTGAGTGTGAGTCATCATCATCATTTGACTGTGACTCATCATGATCATGTGTACAGAAACCTTTTGAAAGATCTCGTTGTTCAGTGTTTGCTAAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAGGACCTACACTTGGTAGAGCATGTGCTGGATTCTGCTGCACAGGAGTATGCTGATAAAGCAAATGTTGAGCCCCCACAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACCCAGTCATCACAATGCTCATGATATCTACTGCTCTGGTGGGGTGGTTCTGGCTTCTCGTGATGGCAAGATTGTGTGTGAGAATACTCTTGATGCACGACTGGATGTAGTGTTCCGTAAAAAGCTTCCAGAGATTCGAAAGCAGCTCTTTGGACAAGTTTTTGCTTGA 717 0.4435 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLSVSHHHHLTVTHHDHVYRNLLKDLVVQCLLRLKEPSVLLRCRKEDLHLVEHVLDSAAQEYADKANVEPPQIIVDNQVYLPPGPSHHNAHDIYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQVFA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11728g00013 238 Hamap V-type proton ATPase subunit E [atpE]. 8 234 IPR002842 GO:0033178|GO:0046961|GO:1902600
Vium11728g00013 238 Pfam ATP synthase (E/31 kDa) subunit 16 233 IPR002842 GO:0033178|GO:0046961|GO:1902600
Vium11728g00013 238 SUPERFAMILY V-type ATPase subunit E-like 87 234 - -
Vium11728g00013 238 Coils Coil 38 61 - -
Vium11728g00013 238 Gene3D - 93 237 IPR038495 -
Vium11728g00013 238 Gene3D - 1 62 - -
Vium11728g00013 238 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 235 IPR002842 GO:0033178|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11728g00013 Vium-Chr11728 88464 93598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11728g00013 1 238 Primary Pumps ATPases(2) AT4G11150 72.689 1.75e-125 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11728g00013 K02150 - gmx:106794127 438.343