Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11728g00010 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACCGCTAGGCAAGTAACATTTTCTAAGAGAAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTTCTGTGTGATGCTGATGTTAGTCTCATAGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGTTCCAGTATGAATGACATAATTACCAAGTATAATACGCATTCCCCTGGCATGGACAAATTGGACAGGCCATCACTAGAAATGCAGCTAGAGACTGCCACCAAATTGAGTAAGGAAATTGCAGAGAGAACCCAAGAACTAAGTTGGATGAAAGGCGATGATCTTCAAGGACTAAGCCTAAATGAGTTGCAGCAACTGGAGAAAAAACTTGAAAGTGGACTCGACCGTGTGATTGAGATAAAGGAAAAGCAGATGATGGGTCAGATTTCTGAACTTCAGAAAAAGGGAATCGTGTTGGAAGAAGAGAATAAGCATTTAAAGAAAAAGCTAGCGGAGACGGAGATGGAGGCTGTGCTGCGTAAAGCAACAATGCATTTTTTGATGGAGTCAAACATGGGAATGCAAGAAGAAGGTGTTTCATTAGAGTCTACAAACAACGTTAGCAGTTGCATCAGTGACCCTCCTCTTGAAGATGGTTCCTCGGACACATCTCTCAAGTTAGGGTTACCCTTCTCTAACTGA 696 0.4195 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVSLIVFSSTGKLFDYSSSSMNDIITKYNTHSPGMDKLDRPSLEMQLETATKLSKEIAERTQELSWMKGDDLQGLSLNELQQLEKKLESGLDRVIEIKEKQMMGQISELQKKGIVLEEENKHLKKKLAETEMEAVLRKATMHFLMESNMGMQEEGVSLESTNNVSSCISDPPLEDGSSDTSLKLGLPFSN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11728g00010 231 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Vium11728g00010 231 Coils Coil 121 141 - -
Vium11728g00010 231 MobiDBLite consensus disorder prediction 196 231 - -
Vium11728g00010 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium11728g00010 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium11728g00010 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium11728g00010 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium11728g00010 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium11728g00010 231 CDD MADS_MEF2_like 12 73 IPR033896 GO:0000977|GO:0045944
Vium11728g00010 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium11728g00010 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Vium11728g00010 231 Coils Coil 147 174 - -
Vium11728g00010 231 Pfam K-box region 89 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium11728g00010 231 Gene3D - 14 106 IPR036879 GO:0003677|GO:0046983
Vium11728g00010 231 FunFam Transcription factor, MADS-box 13 83 - -
Vium11728g00010 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium11728g00010 231 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11728g00010 Vium-Chr11728 72135 79080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11728g00010 1 229 MADS-box Gene Family AT2G22540 53.556 1.21e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium11728g00010 K-box 6.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11728g00010 - - gmx:100776749 347.436