Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11728g00007 ATGTTGTGCTCATCGCATAACCTTGGACTTCATTTCACTTCAATTGGACTGTCTCGCGACGTTAGGCTGTACAATAATCATGGAAGCTGTTGCTTTTATACGTTTGATGGTGGCATACCTAAAATCATGAGGAGATTGACAAGGAGAGCAATCATGAGGAGTCTGACAAGGAGATCGGTCCCCACGATGGCGATGACCATGGACATGGTGGCAATGTCAAGGTCATATAATATAGCAGGAAAACCAATCGCGATTCCATTCATCCCTGCCCTTGGTATTATTGGGTTTGCTGTTTTTGGTCTCAAGCCTCTTGTGCGCCTGAGCAGGAAGATGTTTTGCCAAGAAAGTACTGATAGAAGTTGGAAGAAAAGTAGTTTATATTATATTTTGATATCTTATTTTCAACCTATGCTGCTGTGGACTGGAGTGATGCTCATCTGCAGGGATTTAGATCCACTAGTCCTACCATCAGAAACTAGTCAGGCTATGAAACAACGGCTGCTGAGTTTTGTAAGATCTTTGTCAACCGTGCTTACTATTGCTTACTGTTCTTCAAGCTTAATTCAACAGGCACAAAAATTTTGTATGGAGGCAAATGACTCCTGTGATGAAAGAAATATGAGCATTGATTTTACTGGGAAAGCTGTATACACTGCAATTTGGGTTGCTGCTGTGTCATTGTTCATGGAGTTACTGGGTATCTCCACACAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTGATTTCCCTTGCAGGTCGCGAGATATTTACAAACTTCCTTTCAAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGCATGTTGGCTGGTGGTCACCAACAAGAATTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTATAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGTATAAAGACTCACCTGGCTATCAGTCACTTGGATGTTAACAAGATTAATAGTATAATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAAAGAAAATTGCACAGAAGGGTTTTTCTAGAGAACATTGATCCAGAAAATCAGGCTCTTATGATATTGGTGTCCTGCTTTGTTAAAACTTCACGTTCTGAAGAGTACCTACGTGTAAAGGAGGTAATCCTCTTGGATCTTCTCAGAGTTATAAGTCATCATCGAGCTCGGCTAGCCACACCCATCCGCACAGTTCAAAAAATGTGCAGTGATACTGATTTCGATATTGATCCATTTGATGACACAGTTTCTTCTCGTTCCAGATCAACGAAAAACCGTCCTTTTGCACTGATAGATCCACCTTATAAAGTTAAACCGTCATCTCATTCAACTATTACAAATGAGGACAGAGATAGTAAGACAGATGAAACCTTGCCACCTGACTTCAAAGTAGACTCTGATGAATTTTCTGTGACACCAAGTTCGGTCCAGAAGACCTCCAAATCCAAAAAGTCCAAAAAGGAAAGAACAGGAAGCACTGCAAAGGAAACATCCAAAATTTTGCCAACATCCAATGAGTCTGGTTGTGGAGAGACTACAACACCATCAAAGCTAGATGATGAGAAATCTGTTGTTTCAGAGCCTTCATCATCATCATCATCATCACTTAGTCATTCTTCAGATGAGAATATTACTCTTGATGCTGCTCTGCTGGGCACAGAGAGAAGAACTATTGCAGTTGATGAAGAATTGGTTGATTCTATCCCTTCAGAATCACAAGAAGTTGCATCCCATCAGAATGGGAGTGAACCTCCTATTGGCAAGGATAAGAAGGATGAGCAGAATAGATGTTGA 1893 0.4057 MLCSSHNLGLHFTSIGLSRDVRLYNNHGSCCFYTFDGGIPKIMRRLTRRAIMRSLTRRSVPTMAMTMDMVAMSRSYNIAGKPIAIPFIPALGIIGFAVFGLKPLVRLSRKMFCQESTDRSWKKSSLYYILISYFQPMLLWTGVMLICRDLDPLVLPSETSQAMKQRLLSFVRSLSTVLTIAYCSSSLIQQAQKFCMEANDSCDERNMSIDFTGKAVYTAIWVAAVSLFMELLGISTQKWLTAGGLGTVLISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVGWWSPTRIRGSDCEAVHIPNHNLSINVVRNLSKKSHWRIKTHLAISHLDVNKINSIIADMRKVLAKNPQVEQRKLHRRVFLENIDPENQALMILVSCFVKTSRSEEYLRVKEVILLDLLRVISHHRARLATPIRTVQKMCSDTDFDIDPFDDTVSSRSRSTKNRPFALIDPPYKVKPSSHSTITNEDRDSKTDETLPPDFKVDSDEFSVTPSSVQKTSKSKKSKKERTGSTAKETSKILPTSNESGCGETTTPSKLDDEKSVVSEPSSSSSSSLSHSSDENITLDAALLGTERRTIAVDEELVDSIPSESQEVASHQNGSEPPIGKDKKDEQNRC 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11728g00007 630 Gene3D - 272 325 IPR023408 -
Vium11728g00007 630 MobiDBLite consensus disorder prediction 528 547 - -
Vium11728g00007 630 MobiDBLite consensus disorder prediction 598 630 - -
Vium11728g00007 630 MobiDBLite consensus disorder prediction 446 575 - -
Vium11728g00007 630 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 50 626 IPR045042 -
Vium11728g00007 630 Pfam Mechanosensitive ion channel 214 421 IPR006685 GO:0016020|GO:0055085
Vium11728g00007 630 MobiDBLite consensus disorder prediction 558 575 - -
Vium11728g00007 630 MobiDBLite consensus disorder prediction 476 496 - -
Vium11728g00007 630 SUPERFAMILY Sm-like ribonucleoproteins 257 327 IPR010920 -
Vium11728g00007 630 Gene3D - 166 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11728g00007 Vium-Chr11728 36229 47429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11728g00007 70 629 Mechanosensitive Ion Channel Family AT5G10490 52.872 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11728g00007 K22047 - gmx:100797302 892.108