Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11728g00005 ATGACATCTTATTTTCAGCCATTGTTGTTATGGATTGGGGCAATGCTCATATTCAGGGCATTAGATCCAGTAGTCCTACCATCTAAGTCCTGCCAGGTTGTGAAGCAGCGGCTTCTGAATTTTGTGAGATCTTTGTCAACGGTGATTTCGTTTGCTTATTGTTTATCAAGTTTAATTCAACAAGCACAAAAATTCTTTGTGGAGGCAAATGACTCCAGTAGTTCAAGAAATGTGGCCTTTGATTTTGCTGGGAAGGGAGTATATGCTGGTGTTTGGATTGCTGCCGTATCATTGTTTATGGAGATGTTAGGTTTCTCCACACACAGGTGGTTAACTGCTGGTGGTTTGGGCACTGTATTGCTCACTCTGGCAGGTCGTGAGATATTTACAAACTTTCTGTCAAGCATGATGATCCATGCCACTCGGCCATTTATTGAGAACGAGTGGATTCAAACGAAAATTGATGGATACGAGGTTTCTGGCACAGTAGAGCATGTAGGATGGTGGTCACCGACCATTGTTAGGGGCGATGACCGTGAGGCAGTTCATATTCCTAACCAAAAGTTTACTGTAAATATTGTGAGAAATCTGACCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTATCTGATATGCGCAAGGTTTTGTCAAAGAATCCTCAAGTAGAGCAGCAAAAATTGCACAGAAGGGTCTTTTTGGAGAATGTTAATCCTGAAAATCAGGCTCTTATGATATTGATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTCGTCGGTTATCATCGCGCCAGGCTAGCCACTCCCATCCGCACAGTTCAGAAAATATACAGTGAGGCTGACTCGGACAATATACCTTTTGGGGACTCAGTTTTCACTAGATCTAGAGCTGCAAATCGCCCATACCTACTGATAGAACCAGCATATAAAGTTCATGGTGAAGATAAAGTTAAACCCTCAACCGGTGCAGCTCTCACAAATGAGGAAAAGGATTCCAAGATTGATGAAAGCATGGCATCTGACACCAAAGGAGATGAGAATTTTGGAGCAACATCTACCTCGTCAGCTGATGTAAACAACTCCAGGGATAAATCCCAGTCATTTTCTGAATCACAGACTAAAAGCGAAAATTCAGTAGATGAACGAAAGGGAAGTACAGTTCCTGTATCTAGAAACCAGGCTCAAAGTACTGAGCTTGAATCCTCTCCTGTTGCTAATGAGACCATTGCTGCTACTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCCGTCTCTTCGTCATCGGTTAGACCTTCCCTGGAAGAGAACATTTTTCTTGGGGTTGTCTTAGAAGGTTCAAAACGAACACTTCCAATTGAAGAAGAAATGACTCCATCTCCCATGCCCACGGATTCACAAGAACTTGCTGTCCAACGGAACGGTGGTGGAACTCCTGCTAGCAAGGATAAGAAGGATGGTCAGTCTTCATTTCCAATTGATAAACAGAATGACTAG 1581 0.42 MTSYFQPLLLWIGAMLIFRALDPVVLPSKSCQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFVEANDSSSSRNVAFDFAGKGVYAGVWIAAVSLFMEMLGFSTHRWLTAGGLGTVLLTLAGREIFTNFLSSMMIHATRPFIENEWIQTKIDGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNQKFTVNIVRNLTQKSHWRIKSYIAISHLDVNKINNIVSDMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVGYHRARLATPIRTVQKIYSEADSDNIPFGDSVFTRSRAANRPYLLIEPAYKVHGEDKVKPSTGAALTNEEKDSKIDESMASDTKGDENFGATSTSSADVNNSRDKSQSFSESQTKSENSVDERKGSTVPVSRNQAQSTELESSPVATXETIAATSQSKQDEEKSSVSSSSVRPSLEENIFLGVVLEGSKRTLPIEEEMTPSPMPTDSQELAVQRNGGGTPASKDKKDGQSSFPIDKQND 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11728g00005 527 MobiDBLite consensus disorder prediction 373 403 - -
Vium11728g00005 527 Pfam Mechanosensitive ion channel 87 289 IPR006685 GO:0016020|GO:0055085
Vium11728g00005 527 MobiDBLite consensus disorder prediction 357 371 - -
Vium11728g00005 527 SUPERFAMILY Sm-like ribonucleoproteins 128 198 IPR010920 -
Vium11728g00005 527 MobiDBLite consensus disorder prediction 411 463 - -
Vium11728g00005 527 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 518 IPR045042 -
Vium11728g00005 527 MobiDBLite consensus disorder prediction 489 503 - -
Vium11728g00005 527 Gene3D - 8 142 - -
Vium11728g00005 527 MobiDBLite consensus disorder prediction 345 527 - -
Vium11728g00005 527 Gene3D - 144 199 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11728g00005 Vium-Chr11728 30842 34446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11728g00005 1 518 Mechanosensitive Ion Channel Family AT5G10490 62.286 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11728g00005 K22047 - gmx:100796022 839.721