Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11728g00004 ATGGTCTGTCCAGGTTCAACGCAGCTGTCTCATGACGTTAGGCTCAACAGTAATACTGGATTCTGTGGTTTTCATCGTCATAATCGGATGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTTCACCGGGTAGCTTGAAGCAAGACTCTTCGGCACTCCATCTTTTAAGTAGACTACATGCTCCAATAAGGCACGTGCCTTCCAAATGTAATGTTTTTATATGTCGGTCTGTCCTAAAACCGGGTGGAGGGAGTGGAACTCTGATGAAATCTGCTGGTGTTATTTTAACAAGGTCATATGATGCTTTACAAAGGAACCCCGTTTTGCTTCAATTGATCCCAGCCCTTGGTATCATTGCCTTTGCTGCTTGA 375 0.4427 MVCPGSTQLSHDVRLNSNTGFCGFHRHNRMGVGRLHLVTINLSPGSLKQDSSALHLLSRLHAPIRHVPSKCNVFICRSVLKPGGGSGTLMKSAGVILTRSYDALQRNPVLLQLIPALGIIAFAA 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11728g00004 124 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 124 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11728g00004 Vium-Chr11728 27871 30895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11728g00004 9 123 Mechanosensitive Ion Channel Family AT1G58200 46.552 8.49e-26 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11728g00004 K22047 - vum:124820861 243.432