Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11728g00003 ATGGTCTGTCCAGGTTCAACGCAGCTGTCTCATGACGTTAGGCTCAACAGTAATACTGGATTCTGTGGTTTTCATCGTCATAATCGGATGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTTCACCGGGTAGCTTGAAGCAAGACTCTTCGGCACTCCATCTTTTAAGTAGACTACATGCTCCAATAAGGCACGTGCCTTCCAAATGTAATGTTTTTATATGTCGGTCTGTCCTAAAACCGGGTGGAGGGAGTGGAACTCTGATGAAATCTGCTGGTGTTATTTTAACAAGATATTTATTCAGGTCATATGATGCTTTACAAAGGAACCCCGTTTTGCTTCAATTGATCCCAGCCCTTGGTATCATTGCCTTTGCTGCTTGA 387 0.4341 MVCPGSTQLSHDVRLNSNTGFCGFHRHNRMGVGRLHLVTINLSPGSLKQDSSALHLLSRLHAPIRHVPSKCNVFICRSVLKPGGGSGTLMKSAGVILTRYLFRSYDALQRNPVLLQLIPALGIIAFAA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11728g00003 128 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 128 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11728g00003 Vium-Chr11728 27858 30893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11728g00003 9 127 Mechanosensitive Ion Channel Family AT1G58200 45.000 4.96e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11728g00003 K22047 - vum:124820861 257.684