Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1169g00004 ATGTTGATCATGCTTTTGGTGTTCATCAACTTGCTGATACAAACTCAACTTGGAGCAAGCACTGTGGTTGACCACAACACTTTCTCCTTTGTAACTTTCACTTCTGAGAGTTGCACCAATGGTGAGCTGCTTTGCATGGGTTCAGCCACTGCTGGCAATGGGTATTTGAGTCTCACCCCAGAGCCACAACAAAGCAGCAACTCAAGTTCAACACTGTCTAACACAACCAGAAATGTTGGACGGGTTTTGTACCCTCACCCTGTGAATGTTTGGCCTGCAATTATCTCCACCACTTTCACTCTTAGGATCACTCCTTTTTCAGAAAATTCAACCAGCTATGGGGATGGAGTGGCACTGGTGTTTGCTAACGATAATAGGCCCTCACCAAATGGCTCATATCTTGGCATCTTTGATCAGTCTTCACCAGGTGGGGGTTTTCAACAGCTAGCTGTAGAGATGAACACTGTCATGAATGAATTTGATCAAGATGGAAGCCACATTGGGATAGTGACAACAAGCATCACAAATCCACTTGCTTCTGAGAGTCTCAATAGCACTGGCATTGACCTCAGAAGTGGAAGAGACATTGAGGTCAAAGTAGACTATGATGGATGGAGTAAAATGATTTTTGTCTCTGTGGGATACCCAGAAAGCCAATTGAAGAATGTCCTCAACCATTCAATTGACCTACCTGATATACTTCCAAGCTCCATTTATGTTGGTTTCACAGCCTCCACAGGCAACACTTTTCCTGAAAGCCACCAGGTCCTCAACTGGGTATTCACATCGGTGCCACTTCCTTTTCTTTCTGTTCAACACAGTAGAGTTGGCACCATCAAGACCTTGTTGGTAATTGCCCTGGTGTGCTTATTTCCTTTTATTTCGATAGTTGTTTGGAGAAGATATGTGAGGGGTAAAAAGAAGGGTGATATAGAAAGCCTATCAAAGAAGGCTGCAGATATCCCCAAGGTGTTCACCTACAAGCAATTATCAAGAGCCACATGCAACTTCAGCCAGGAAAATCTTCTGGGTAAAGGTGCATTTGGCAGTGTTTATAAAGGAATCATATCATACTCTGGAAAAACTGTTGCAGTAAAGAAGATTTCAGCAACTTCTAAACAAGGTGAAAGAGAGTTCTTAGCTGAAATATGTACCATAGGGCGTCTTAGCCACAAAAACTTAGTGAAGCTCCAAGGCTGGTGCATTGAAGGCAAGAATCTTCTCTTGGTTTATGAATACATGCAAAATGGAAGCCTTGATCACTTCATAGCCAAAGGCAGTCTGAACTGGCAACTGAGGCACAGAGTATTGACAGGATTGGCATCAGCATTACTCTACCTTCATGAAGAGAGTGGAAACCCTTTTGTTCACAGAGATGTTAAGCCAAACAATGTCATGTTGGACTCAAATCACGATGCTCATTTAGGAGATTTTGGGCTAGCAAGACTACTCAAAGGTGAAGGCTCAGTGACCACAAATCTAAATGGAACTCTAGGATATTTGGCTCCTGAACTAAGCTTCACAGGGAGAGCTACACCAGAATCAGACGTGTATAGCTTTGGCATGGTAGTTCTTGAAGTGATATGTGGGAAAAGGTTAAACTGGATCAAGCAAGGGAACAGTTTTGTGGATTCTGTGTGGAATTTGCACGCAGAAAATGGTTTGGTTGAGTGTGTTGACAAAAAACTAGAGAACAAATTTGATGAGGAAGAAGCTAAAAGGGCACTGATAGTTGGTTTGGCATGTTTGCATCCTGATTCCATGTTGAGGCCAAGGATGAGAAAAGTGGTGAACATTTTTCAGAACCCAAATGAACCTTTGATGCAGTTACCAAAAGTGAGGCCAGCAGGAGTTTATGTATCAGTTTCTTGCAGTTCATCATCCTCAAACACTACCTCTAAAACTGAGATGCAGCTCCAATCATCCACAACATCATCACATGAAAAATTCAACAGTATATGA 1962 0.4246 MLIMLLVFINLLIQTQLGASTVVDHNTFSFVTFTSESCTNGELLCMGSATAGNGYLSLTPEPQQSSNSSSTLSNTTRNVGRVLYPHPVNVWPAIISTTFTLRITPFSENSTSYGDGVALVFANDNRPSPNGSYLGIFDQSSPGGGFQQLAVEMNTVMNEFDQDGSHIGIVTTSITNPLASESLNSTGIDLRSGRDIEVKVDYDGWSKMIFVSVGYPESQLKNVLNHSIDLPDILPSSIYVGFTASTGNTFPESHQVLNWVFTSVPLPFLSVQHSRVGTIKTLLVIALVCLFPFISIVVWRRYVRGKKKGDIESLSKKAADIPKVFTYKQLSRATCNFSQENLLGKGAFGSVYKGIISYSGKTVAVKKISATSKQGEREFLAEICTIGRLSHKNLVKLQGWCIEGKNLLLVYEYMQNGSLDHFIAKGSLNWQLRHRVLTGLASALLYLHEESGNPFVHRDVKPNNVMLDSNHDAHLGDFGLARLLKGEGSVTTNLNGTLGYLAPELSFTGRATPESDVYSFGMVVLEVICGKRLNWIKQGNSFVDSVWNLHAENGLVECVDKKLENKFDEEEAKRALIVGLACLHPDSMLRPRMRKVVNIFQNPNEPLMQLPKVRPAGVYVSVSCSSSSSNTTSKTEMQLQSSTTSSHEKFNSI 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1169g00004 653 Pfam Protein kinase domain 338 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1169g00004 653 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 264 IPR013320 -
Vium1169g00004 653 SMART serkin_6 337 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1169g00004 653 SUPERFAMILY Protein kinase-like (PK-like) 321 635 IPR011009 -
Vium1169g00004 653 Pfam Legume lectin domain 27 264 IPR001220 GO:0030246
Vium1169g00004 653 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
Vium1169g00004 653 CDD lectin_legume_LecRK_Arcelin_ConA 28 263 IPR001220 GO:0030246
Vium1169g00004 653 Gene3D - 23 270 - -
Vium1169g00004 653 ProSitePatterns Protein kinases ATP-binding region signature. 343 367 IPR017441 GO:0005524
Vium1169g00004 653 MobiDBLite consensus disorder prediction 625 653 - -
Vium1169g00004 653 Gene3D Transferase(Phosphotransferase) domain 1 414 609 - -
Vium1169g00004 653 PANTHER - 66 604 - -
Vium1169g00004 653 FunFam probable L-type lectin-domain containing receptor kinase S.5 414 608 - -
Vium1169g00004 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vium1169g00004 653 ProSiteProfiles Protein kinase domain profile. 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1169g00004 653 FunFam probable L-type lectin-domain containing receptor kinase S.5 322 413 - -
Vium1169g00004 653 FunFam Putative L-type lectin-domain containing receptor kinase S.7 24 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1169g00004 Vium-Chr1169 59081 61549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1169g00004 4 636 Receptor kinase-like Gene Family AT5G55830 36.390 1.68e-112 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium1169g00004 Pkinase 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1169g00004 - - vun:114190285 1173.69