Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11688g00001 ATGTCCATGGATCCTGCCAAGAAGCCTAACAAGATCAGAGACATAGTGAGGCTTCAACAGATTCTTAAGAAATGGAGAAGGGTTGCAAACTCTTCAAAAACAAGCAGAAGTAACAGTAACAACAGCAACAACACCGGCAGAAGCATCAAATTTCTCAAAAGAACACTTTCTCTGTCTGAACGTGAGGGAGGAGGATCGAGCAGTGTTGTTCCCAAGGGCTACGTTGCTGTTTGTGTTGGCGTGGACCTTAGCAGGTTCGTTATACCAACCGAGTATTTGGGTCACCAAGCCTTTCACATGTTACTCAGAGAAGCTGAGGAAGAGTTTGGGTTTGAACAGACTGGGGTTCTCAGAATCCCTTGTGAAGTGTCTGTGTTCGAGAGTATCTTGAAGATTGTGGAGAGAAAGGACAAGTTTTTCACTCAGAAATGCAGGTTTAGCATTGAGAAAATGATGGGATATTGTTCCTCCAACAACCTTGCTTATTCTCATCACCCTCCAAGTCCAATGTGCAGATAG 519 0.4412 MSMDPAKKPNKIRDIVRLQQILKKWRRVANSSKTSRSNSNNSNNTGRSIKFLKRTLSLSEREGGGSSSVVPKGYVAVCVGVDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKIVERKDKFFTQKCRFSIEKMMGYCSSNNLAYSHHPPSPMCR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11688g00001 172 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 42 129 IPR003676 GO:0009733
Vium11688g00001 172 MobiDBLite consensus disorder prediction 26 46 - -
Vium11688g00001 172 Pfam Auxin responsive protein 24 132 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11688g00001 Vium-Chr11688 2476 3400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11688g00001 6 172 Calmodulin-binding Proteins AT4G31320 52.308 4.57e-57 176