Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11683g00002 ATGGCGGCAGGGCGAAAAAGTGTTCCGCTCAAAGGGGAATTTTTCAAATACAGCTCAACAAAGAGGTCCGATCACTATAAGAATGGCTCTTTCGGCGTGGAAGAGGGTGGATCTCGCAGCCATCACTTTGCTCGTTCCCATGAGCCTCGTGGTGGGAAAGAGGAGAGAGAGCAAGGTGAGATCTGTGTTGAAGATGAGGAATATGAGGTTGCTTTGCCACCGCCACAGAAGAAAAGGAAGTTTTCTCCAATCGTATGGGACCTAGCAGAGAAGGAAGAAAAAATTTCGTCTGAGAGTAAGATCTCGGATACTGTTGCTCTGTCTCCTCCTCGTCCATCTGTACTGAGCACTCCTGGAGCCAACAATCCTGGTTCAGATGTCCTTATGGAGGAATCTTTGCGGGATTCTCGAAGCTATAGACAGGATGTGGAGGAAGAGAAGGATGTGCAAGAATGGACTATCAGAAAGTCAAGATGGGCTACTGATGATGGTCCCTCACCCATGGCTGCTGATGATAAATTCAATCATGTCAAAGGCAGCTCCAGTCCTGAAATTGGTGAATTCCATCGCGGTGGATCTTCAGAAAGCACCGTCACTAGATCGTCAGGAAGCACGGGGAGAGATCAATATCTTGGACTTTCTACTGATGACGCCGATTCTGAAAGGGATTTCAATATAGACCCCGTGGTCGATGTTGAGGGACCAAGAGACGTTGGTGATTGTCCATCGGATTCTGAAGAGAGTGATGGATTGATGCAAGTGCAGAGAAATATAAATATGCTTCACAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAGGGATAAGAAAACTGGAGAATTAGTCGCGTTGAAGAAGGTGAAGATGAATATAGAGAGGGATGGCTTTCCGATGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTTAACCATCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTAGATGATTTTGACGGTACTTTTATGGTAATGGAATACATGGAGTATGACCTCAAGGGAATGATGGAGGTTAAGAAACAGCCTTTTAGCATTAGCGAAATTAAATCCTTGGTAAAGCAACTTCTTGAAGGTGTCAAGTATCTTCATGATAACTGGGTTATCCATAGGGACTTGAAGTCATCAAACATTCTGCTGAACCATGACGGGGAGCTTAAAATATGCGATTTTGGGTTGTCGAGGCAGTATGGAAGCCCTCTGAAGCCATATACTCCTGTTGTGGTTACACTGTGGTACAGGGCACCTGAACTTTTGTTGGGTGCTAAAGAATATTCAACAGCAATTGACATGTGGTCAGTAGGTTGCATAATGGCTGAATTAATTTCCAAGCAGCCTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATCAGATTTTTCGAACCCTGGGTACACCTGATGAGAAAATTTGGCCTGGATTATCCAAATTACCTGGGGCTAAAGCAAAATTTGTCAAGCAACCGTTTAATATGTTAAGGAAGAAGTTTCCAGCTGCATCATTTACCGGTTTGCCAGTTTTATCGGAGCTGGGATTTGACTTGTTGAAGAAGCTTTTAACTTATAATCCCGAAGAGAGGATAACTGCTGAAGATGCTCTCCTTCATGATTGGTTCTATGAAGCCCCTCCTCCCAAATCTGATTTCAAGCCTATTTTTCCTTCTTGGAGGTGCTAG 1740 0.4351 MAAGRKSVPLKGEFFKYSSTKRSDHYKNGSFGVEEGGSRSHHFARSHEPRGGKEEREQGEICVEDEEYEVALPPPQKKRKFSPIVWDLAEKEEKISSESKISDTVALSPPRPSVLSTPGANNPGSDVLMEESLRDSRSYRQDVEEEKDVQEWTIRKSRWATDDGPSPMAADDKFNHVKGSSSPEIGEFHRGGSSESTVTRSSGSTGRDQYLGLSTDDADSERDFNIDPVVDVEGPRDVGDCPSDSEESDGLMQVQRNINMLHSCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGMMEVKKQPFSISEIKSLVKQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELISKQPLFRGKSELEQLDQIFRTLGTPDEKIWPGLSKLPGAKAKFVKQPFNMLRKKFPAASFTGLPVLSELGFDLLKKLLTYNPEERITAEDALLHDWFYEAPPPKSDFKPIFPSWRC 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11683g00002 579 FunFam cyclin-dependent kinase G-2 isoform X1 255 351 - -
Vium11683g00002 579 SMART serkin_6 270 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11683g00002 579 MobiDBLite consensus disorder prediction 92 223 - -
Vium11683g00002 579 FunFam Cyclin-dependent kinase G-2 352 579 - -
Vium11683g00002 579 MobiDBLite consensus disorder prediction 38 59 - -
Vium11683g00002 579 MobiDBLite consensus disorder prediction 229 243 - -
Vium11683g00002 579 MobiDBLite consensus disorder prediction 229 248 - -
Vium11683g00002 579 CDD STKc_CDC2L1 264 560 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vium11683g00002 579 ProSiteProfiles Protein kinase domain profile. 270 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11683g00002 579 MobiDBLite consensus disorder prediction 100 123 - -
Vium11683g00002 579 Pfam Protein kinase domain 270 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11683g00002 579 MobiDBLite consensus disorder prediction 192 211 - -
Vium11683g00002 579 PANTHER CELL DIVISION PROTEIN KINASE 269 564 - -
Vium11683g00002 579 SUPERFAMILY Protein kinase-like (PK-like) 264 565 IPR011009 -
Vium11683g00002 579 Gene3D Phosphorylase Kinase; domain 1 252 351 - -
Vium11683g00002 579 Gene3D Transferase(Phosphotransferase) domain 1 352 571 - -
Vium11683g00002 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Vium11683g00002 579 MobiDBLite consensus disorder prediction 25 60 - -
Vium11683g00002 579 MobiDBLite consensus disorder prediction 130 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11683g00002 Vium-Chr11683 875 4164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11683g00002 265 566 Core Cell Cycle Gene Families AT5G10270 44.340 2.43e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vium11683g00002 Pkinase 1.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11683g00002 K08818 - gmx:100788840 904.82