Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11660g00001 ATGTCAAGTTCAGCAAGAAAACTAACCTTCAACACTGTCTCCGTCAGCTTGGGCTGTGGCACCTGCAGAAGGCCCAAGCTTCTCCGTCACATATTCCACCCCAAACGTCGCCCCAAGAGGCCCACCTTCCGAGCCCAAACCCATCACTGGTCGCAAGACAGAGACGACACTACTACCACCGCCACCACAAGTACCACAACCACCACCACCACCTTCTCTCCGTGCCATGTCGACTCTTCCGCACAGTTCTGCGACTACGCCAAGAGCGTGCGGGGGTTCGGCCGTGTGGGGAGCGAGGGCGTGGCGGTGGAAAAAGACTCCGACGACCCTTACCTGGACTTCCGACACTCCATGCTCCAGATGATACTCCAAAACGAGATTTACTCCAAAGACGATCTCAGAGAACTTCTCAACTGTTTCCTCCAGCTCAATTCACCGGACCACCACGGCGTCATAGTCAGAGCCTTCACCGAGATCTGGAACGGCGTTTTCTCCGTCAGCTCCGGCACCACCGCATTCCACCGCAACCGCAAGACTCGTGACTTTTAG 549 0.5628 MSSSARKLTFNTVSVSLGCGTCRRPKLLRHIFHPKRRPKRPTFRAQTHHWSQDRDDTTTTATTSTTTTTTTFSPCHVDSSAQFCDYAKSVRGFGRVGSEGVAVEKDSDDPYLDFRHSMLQMILQNEIYSKDDLRELLNCFLQLNSPDHHGVIVRAFTEIWNGVFSVSSGTTAFHRNRKTRDF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11660g00001 182 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vium11660g00001 182 NCBIfam uncharacterized plant-specific domain TIGR01568 101 161 IPR006458 -
Vium11660g00001 182 MobiDBLite consensus disorder prediction 34 68 - -
Vium11660g00001 182 ProSiteProfiles OVATE domain profile. 103 162 IPR006458 -
Vium11660g00001 182 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 45 165 IPR038933 GO:0045892
Vium11660g00001 182 Pfam Transcriptional repressor, ovate 107 163 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11660g00001 Vium-Chr11660 25660 26574 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium11660g00001 Ovate 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11660g00001 - - pvu:PHAVU_007G269800g 327.791