Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11657g00001 ATGGCATTAGCCGTGGTAGGTGGTGCTCTTCTCTCTGCTTTCTTTGACGTTCTTTTTGACAGGCTAGCTTCCCCTGAGCTTCTCAGCCTGATCCGTGGAAAGAAGCCTGACAAGTTGCTTCAAAAGGTGGAGAACCACCTGATAGTCCTTAGAGTTGTGCTTGCTGATGCTGAGAATCGACAAATCACAGACTCCAATGTCAAAAAATGGCTCGATGTTCTCAGAGATATTGTCTATGAGGTTGATGACTTACTTGACGAAGTTTCTACCAAAGCTGCTACTCAAAAGGAGGTAAGCAATTCCTTTTCTCACATTTTCAATAGGAAAAGGATTGTTAGTATTAATAAATTGGAAGACATAGCTGAAAGATTAGATGACATTTTAAAACAAAAGGAGAGTCTTAATTTGAAGGAGATTCCAGTGGAAAGCAACCAGCCATGGAAAGATCAGCCTACATCTTTGGAAGACAGATATGGTATGTACGGCAGGGATAAAGACAAGGAGGCCATAATGAAGATGGTATTGGAGGATAACACTGATGGTGAAGAAGTGTCCGTGATCCCTATTGTAGGCATGGGTGGGGTTGGTAAAACCACTTTGGCCCGATCTGTGTACAACGATGGAAAATTGAAGCAGATATTTGATTTAAAGACATGGGTTTGTGTTTCTGATATATTTGATACTGTGAAGGTCACAAAAACTATGGTAGAGGAAATTATCAAGATGCCTTGTAATTTGTATGATCTAAATCTACTTCAACTTGAATTGATGGACAAGCTGAAAGGTAAAAGATTCTTCATTGTTTTGGATGATGTTTGGATTCAGGACTTTGATAGTTGGAATAGTCTTACAAAACCATTTTTAAGTGGGATTAGGGGAAGTAAAGTTCTCGTGACAACCCGCAACGAAAGTGTAGCGGCTGTAGTCCCTTTTAATGTTGTTAAAGTATATCATCTAAACCAATTGTCGAATGAAGATTGTTGGTTGGTGTTTGCAAATCATGCATTTCCTCTCTCAGAAGATAGTGAAAATAGAGGAACTCTAGAAAAGATTGGAAAGGAGATTGTTAAAAAGTGTAATGGGTTGCCTTTGGCTGCACAGTCACTTGGAGGAATGTTGAGAAGAAAGCACGCTCTTAGGGATTGGATTAATGTACTTGAAAGTGACATTTGGAAACTTCCTGAAAGTCAGTGTAAAATTATTCCAGCCCTCGACTAATTTATAATCATCCCTCCCGTGTAAAAACGGTGTTTTGTATATTGCTCACTGTACCCCAAGGATTTCGAATTTCGAAAGGATGAACTGATCCTGCTGTGGATGGCTGAAGATCTTTTAAAAGCACAAAGAAAAGAAAAGACTTTAGAAGAAGTTGGTGAGGAGTATTTTGATGATTTGGTTTCAAGATCGTTTTTTCAATGTTCAAGTCTTCGGCCTTCGAGTAATTATTTTATAATGCATGACCTCATGCATGATCTAGCAACATTCCTTGGCGGAGAATTCTATTTCAGAGCAAATGAACTTGGAAAAGAAACCAAAATTGATAGAAAGACTCGTCATTTGTCTATTGAAAGATTCAGTGATCCAGTCTCCGATATTGAAGTTTTTGAGAGAGCCAACTTTTCCAAGACCTTCTTGCTAACATTATAA 1647 0.3862 MALAVVGGALLSAFFDVLFDRLASPELLSLIRGKKPDKLLQKVENHLIVLRVVLADAENRQITDSNVKKWLDVLRDIVYEVDDLLDEVSTKAATQKEVSNSFSHIFNRKRIVSINKLEDIAERLDDILKQKESLNLKEIPVESNQPWKDQPTSLEDRYGMYGRDKDKEAIMKMVLEDNTDGEEVSVIPIVGMGGVGKTTLARSVYNDGKLKQIFDLKTWVCVSDIFDTVKVTKTMVEEIIKMPCNLYDLNLLQLELMDKLKGKRFFIVLDDVWIQDFDSWNSLTKPFLSGIRGSKVLVTTRNESVAAVVPFNVVKVYHLNQLSNEDCWLVFANHAFPLSEDSENRGTLEKIGKEIVKKCNGLPLAAQSLGGMLRRKHALRDWINVLESDIWKLPESQCKIIPALDXFIIIPPVXKRCFVYCSLYPKDFEFRKDELILLWMAEDLLKAQRKEKTLEEVGEEYFDDLVSRSFFQCSSLRPSSNYFIMHDLMHDLATFLGGEFYFRANELGKETKIDRKTRHLSIERFSDPVSDIEVFERANFSKTFLLTL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11657g00001 548 Gene3D - 409 494 IPR036388 -
Vium11657g00001 548 Coils Coil 114 137 - -
Vium11657g00001 548 Pfam NB-ARC domain 164 387 IPR002182 GO:0043531
Vium11657g00001 548 PANTHER DISEASE RESISTANCE PROTEIN RP 72 523 IPR044974 GO:0006952
Vium11657g00001 548 Pfam Rx N-terminal domain 11 99 IPR041118 -
Vium11657g00001 548 PRINTS Disease resistance protein signature 259 273 - -
Vium11657g00001 548 PRINTS Disease resistance protein signature 359 373 - -
Vium11657g00001 548 PRINTS Disease resistance protein signature 186 201 - -
Vium11657g00001 548 Coils Coil 40 60 - -
Vium11657g00001 548 FunFam Probable disease resistance protein At1g63360 409 495 - -
Vium11657g00001 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 421 IPR027417 -
Vium11657g00001 548 Gene3D - 148 316 IPR027417 -
Vium11657g00001 548 Gene3D - 321 402 IPR042197 -
Vium11657g00001 548 FunFam Probable disease resistance protein At1g61300 148 312 - -
Vium11657g00001 548 Gene3D - 17 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11657g00001 Vium-Chr11657 62 1827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11657g00001 156 376 WRKY Transcription Factor Family AT5G45050 25.000 1.40e-06 49.7