Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11642g00002 ATAAATATATATATACACACACACAAACACCACATACCTATTACCTATTATAAGATCTATGTTTCATCTTCTTCAATAGTTCTGTGCTTTCCACACACCATACATCCTACCTTCATCAAAAGTACAAGGAAACTCTATCTTGTTTTTTATTTTATTGTTTTTGATCTGAGAAATCAAACACTTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCGGACTGGGCAGCGACTGGTTCTTCCGCTGCTGCTGCTGCCGGTGGCCGTGCTGTCCCCGTGGACGACCTCTCCCTTGGTTTCAATGCTGGTCCTGCCGCCCCAGCAGCAGCCACCGGACCCACCAGCGGAATGTGGTCCGGTGCCAATAGGTCGATCAATTACCCCGAAATGGGAATGTTCGTGGTGGCGCCAGCCTCCTCCTTCCACCATCACCACCACCAGCAACAGCCCCCGCACGACCCCGTCATGGCAGATTCCCTCAACCCAGCCACTGCACTCGGCGTCGGCGTCATCCCTCTTCTTGCCGCCACGCCGTGTCTTGAATCCGACAACTTCCTCGGAAACAGGCCACGTGGTGGGGGAATTCAGTTTTGGCAAGACCAAGGACCCCATCAGAGCCACTACATGAAGAAGCAACAGCAGCAGGGGCTTCTCGACCAAAGTAACACTAGTTCTGGAAACTTGGTTCAAACCAGTGGCGGCTTAACTGCTTCGGGTACCAGTAGTGGGGGAACTACGTGCCAGGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACCTGCTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTTCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACCTCGGCCACTGCGGCGGTCGCTGGTTCCAGTGGCTCCACCTCCGGGACTAAAAAACCTAGGCTCATTGCTTCACAAACCACTACAACATCTCACACTTCCACTTCTAACACCACCCCTCCCAGAAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGCTTCAAGGAGTCATTACCTGGGCAAGTACGTGCACCGGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTACGCGTACCAGGCAGTGGTGAAGATTGGTGGGCACGTGTTCAAAGGGTTTCTGTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGTGGAAATGGCGGAAGTGGAAGCGGAGGGAGTGGTGGGGTGGGGAGAAATGGGGTGTCTTCTTCTCCGATGATGGATCCTTCTGATGTTTATGCAGGTTCGGGTGGAGGGTTGCTTGGGGGTTCTTCTGCTTATGGTAATCCAATGAATTGA 1413 0.523 INIYIHTHKHHIPITYYKIYVSSSSIVLCFPHTIHPTFIKSTRKLYLVFYFIVFDLRNQTLSVVATTRRLPSDSGAFADWAATGSSAAAAAGGRAVPVDDLSLGFNAGPAAPAAATGPTSGMWSGANRSINYPEMGMFVVAPASSFHHHHHQQQPPHDPVMADSLNPATALGVGVIPLLAATPCLESDNFLGNRPRGGGIQFWQDQGPHQSHYMKKQQQQGLLDQSNTSSGNLVQTSGGLTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTSATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGNGGSGSGGSGGVGRNGVSSSPMMDPSDVYAGSGGGLLGGSSAYGNPMN 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11642g00002 470 NCBIfam putative zinc finger domain, LRP1 type 251 293 IPR006510 -
Vium11642g00002 470 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 144 452 IPR007818 GO:0003700|GO:0006355
Vium11642g00002 470 MobiDBLite consensus disorder prediction 206 258 - -
Vium11642g00002 470 MobiDBLite consensus disorder prediction 299 358 - -
Vium11642g00002 470 Pfam Domain of unknown function (DUF702) 249 406 - -
Vium11642g00002 470 MobiDBLite consensus disorder prediction 302 354 - -
Vium11642g00002 470 NCBIfam LRP1 C-terminal domain 358 405 IPR006511 -
Vium11642g00002 470 MobiDBLite consensus disorder prediction 421 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11642g00002 Vium-Chr11642 23544 25339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11642g00002 61 450 C2H2 Transcription Factor Family AT5G12330 50.118 1.00e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium11642g00002 DUF702 1.7e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11642g00002 - - gmx:100817745 618.616