Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11638g00002 ATGGAGGAGAGGAATGAGATGGAAAAGATTGACGATGTTATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTCTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTCCCTATTGAACTGATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAAGCTAGCAGGCACAGGGGAGAAAGAGTGGTACTTCTATTGCCCAAGGGACAGAAAATACAGGAACAGTGCACGTCCAAATAGGGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGACCTATATATTCCTCTGAAGGGAAGTGCATTGGTCTGAAGAAGTCTCTTGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTGCATCTCTGACTCAGCCCCTTCTAAAAAACTCTCAGACAAAACCCTCCTTCCAAGTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTTTCCATGGCACAGAAAGCTTTATCTCACCCTTGGATCTCTCAGTTATCAGGAAGCATGGTATCTGACATGTTCACACAGGGTGCAGAAACAAACCATCACCTAGGATCACCAGCCATTCAATTTTGTTATGAAAAGCAAGAGTTAAACCAAGCCTCCAATAGTGACATCAACACCAACTTCACAGATTCAGATATTGCCAGTTACAAACCCATCAACAGCAGCACAGTTCCCAAGCCTTCACCACAAATTCCTGTTTCAGATGACTTCATATTCTACACAGAACACACCAAGTGCACACTTGATACCAGTTCCATGCTTTCTCCCAACCCTGACTACATAACATTTGAAGAGCCAAACCAACAACAGTACAGTGGCTTCTCAACCAATCTACCTCACTTCATCCAACAAAACATGAGCACAGAAACAGTAACAAAAGAACAACAAGATTGGGAAACAATTGGGAGAGCCACTGGATTTCCCTTTACTTTGCTTCCCCCATATGATGCATGGAAGTCTTCTTCTGTGGCATGGGATTCATCTTCTTGCCCCAGTGACATGTCCACTACCTATTCCACCAGTAAATGCTACACTTGA 1116 0.4346 MEERNEMEKIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSAPSKKLSDKTLLPSDSWAICRIFKKTNSLSMAQKALSHPWISQLSGSMVSDMFTQGAETNHHLGSPAIQFCYEKQELNQASNSDINTNFTDSDIASYKPINSSTVPKPSPQIPVSDDFIFYTEHTKCTLDTSSMLSPNPDYITFEEPNQQQYSGFSTNLPHFIQQNMSTETVTKEQQDWETIGRATGFPFTLLPPYDAWKSSSVAWDSSSCPSDMSTTYSTSKCYT 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11638g00002 371 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Vium11638g00002 371 SUPERFAMILY NAC domain 11 170 IPR036093 GO:0003677|GO:0006355
Vium11638g00002 371 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Vium11638g00002 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 268 - -
Vium11638g00002 371 FunFam NAC domain-containing protein 35 22 173 - -
Vium11638g00002 371 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11638g00002 Vium-Chr11638 16388 19774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11638g00002 2 186 NAC Transcription Factor Family AT5G39820 68.000 2.73e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium11638g00002 NAM 2.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11638g00002 - - gmx:100777630 608.216