Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11634g00002 ATGGCAGCAGAAGAAGATGAGCAGTTGCAACAACTCAGATCCAAAGCCACGGAGCTTTTCATCAGAGAAGAATGGAATGCCTCGATCGAAGCCTATTCCCATTTCATCACCCTTTGCACCCAAACGCTCTCCCATTCTCTCCCAAACCAAAAGCTTCGCAGATCCCTCTGCATAGCTTTGTGCAATCGCGCAGAAGCGAGGTCCAAGTTGAAGGACTTCCACTGCGCCCTTCGGGACTGTGACCACGCTTTGGAACTCGATGCCACGCATTCGAAGACCCTTTTGTGCAAAGGTAAGATCTTGCTCTGCCTCAACCGGTATGCTTCCGCTCTTGAGTGCTTCAGAACCGCCACGCTAGACGGAAACGCTGAAAGCGTAAGTGGGTACTTGGAGAGGTGCAAAAGTTTGGAGCTTTTGTCCAAAACCGGGTGTTTGGATCTTTCGGATTGGGTTTCAAATGGGTTTCGAGGGAAGCTTCCAGAGCTTGCAGAGCACATTGGTGCCGTGGAGATTAGAAGATCTGAGATCAGTGGGAGAGGATTGTTTGCAACGAAGAATATTGATGCTGGGTCGTTGATCTTGGTCACCAAGGCAATTGCCATGGAAAGGAGTATCATAATGGGAGGTGTTCAGGATCTGAGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGTTTGTTGGGAAGTGTCCGAGAACAAGGGGTTTGATTAATAGGTTGTCAAGTGGGGAGAATGAGGAAGAACTTGAGGTGCCTGATGTGGGTCTCTTTAGACCTGAGAATGTGGAGAAGGATGGTGAAGTTGAGGTTGATGTTGATATGGTTAAGTTGGTTGGTATATTGGATGTGAATTCTCTGACAGAGGATGCTGTTTCGGCCAATGTGTTGAGGAGGGGCAATGATTATTACGGTGTTGGCCTGTGGCTGCTCCCTTCCTTGATAAACCACTCATGTTGTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCTAAGGATTTGAAGGCTGGGGAGGAGGTGACTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGTCTGTGAATTGGTGTATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAAGTGTTCCCGAAACAAGAAATAAGAGAGATTGAGATTGGTCTTGAGAGAGGGATGGATGTGGGGGGTGTGGTGTTCAAGTTGGAGGAACAAATGAAGAGGTTGAAGGTAAGGGGTAAGGAGAAAGGGTATTTGAGGGCATCATTTTGGGAAGCTTATTCTCAGGCTTATAGGACAGAGAGGGCCATGAAGAGGTGGGGAAGGAAGATTCCTACTGCTGAGGCTGTGGTTGATAGCATCACTGATGTGGTTGGAGGAGACCACAGGCTGCTTAAGTTTGTGATGGAGGAGTTCAAGAAAAATAGTGGTGGAGTTGTTGAGAGGGACAAAGTTTTCAAGATGGCAAAACAAGTGTTTGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTCTGCAACTCTGCATTGCTGATTAA 1572 0.4714 MAAEEDEQLQQLRSKATELFIREEWNASIEAYSHFITLCTQTLSHSLPNQKLRRSLCIALCNRAEARSKLKDFHCALRDCDHALELDATHSKTLLCKGKILLCLNRYASALECFRTATLDGNAESVSGYLERCKSLELLSKTGCLDLSDWVSNGFRGKLPELAEHIGAVEIRRSEISGRGLFATKNIDAGSLILVTKAIAMERSIIMGGVQDLSEDAQLAMWKNFIDKVFEFVGKCPRTRGLINRLSSGENEEELEVPDVGLFRPENVEKDGEVEVDVDMVKLVGILDVNSLTEDAVSANVLRRGNDYYGVGLWLLPSLINHSCCPNARRLHVGDYLVVHASKDLKAGEEVTFAYFDPLCGLSKRKEMSVNWCIHCKCKRCRFEGEVFPKQEIREIEIGLERGMDVGGVVFKLEEQMKRLKVRGKEKGYLRASFWEAYSQAYRTERAMKRWGRKIPTAEAVVDSITDVVGGDHRLLKFVMEEFKKNSGGVVERDKVFKMAKQVFGKVVKKQAMKTLLQLCIAD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11634g00002 523 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 509 - -
Vium11634g00002 523 SMART tpr_5 91 123 IPR019734 GO:0005515
Vium11634g00002 523 SMART tpr_5 57 90 IPR019734 GO:0005515
Vium11634g00002 523 ProSiteProfiles SET domain profile. 167 356 IPR001214 GO:0005515
Vium11634g00002 523 Gene3D SET domain 256 385 IPR046341 -
Vium11634g00002 523 SUPERFAMILY TPR-like 10 117 IPR011990 GO:0005515
Vium11634g00002 523 SMART set_7 167 362 IPR001214 GO:0005515
Vium11634g00002 523 CDD SET_SMYD 302 381 - -
Vium11634g00002 523 Gene3D Tetratricopeptide repeat domain 3 141 IPR011990 GO:0005515
Vium11634g00002 523 SUPERFAMILY SET domain 169 381 IPR046341 -
Vium11634g00002 523 Pfam SET domain 178 355 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11634g00002 Vium-Chr11634 10469 12375 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium11634g00002 SET 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11634g00002 - - gmx:100812233 911.368