Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11634g00001 ATGCGAGAGCCTAGACAAAGACTACCCCTCCCAAAGAATCGCTATGCGCCCAAACTCGCCCTTCAAATTAAAATAATAAGTNCTTCCGCTCTTGAGTGCTTCAGAACCGCCACGCTAGACGGAAACGCTGAAAGCGTAAGTGGGTACTTGGAGAGGTGCAAAAGTTTGGAGCTTTTGTCCAAAACCGGGTGTTTGGATCTTTCGGATTGGGTTTCAAATGGGTTTCGAGGGAAGCTTCCAGAGCTTGCAGAGCACATTGGTGCCGTGGAGATTAGAAGATCTGAGATCAGTGGGAGAGGATTGTTTGCAACGAAGAATATTGATGCTGGGTCGTTGATCTTGGTCACCAAGGCAATTGCCATGGAAAGGAGTATCATAATGGGAGGTGTTCAGGATCTGAGTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGTTTGTTGGGAAGTGTCCGAGAACAAGGGGTTTGATTAATAGGTTGTCAAGTGGGGAGAATGAGGAAGAACTTGAGGTGCCTGATGTGGGTCTCTTTAGACCTGAGAATGTGGAGAAGGATGGTGAAGTTGAGGTTGATGTTGATATGGTTAAGTTGGTTGGTATATTGGATGTGAATTCTCTGACAGAGGATGCTGTTTCGGCCAATGTGTTGAGGAGGGGCAATGATTATTACGGTGTTGGCCTGTGGCTGCTCCCTTCCTTGATAAACCACTCATGTTGTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCTAAGGATTTGAAGGCTGGGGAGGAGGTGACTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGTCTGTGAATTGGTGTATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAAGTGTTCCCGAAACAAGAAATAAGAGAGATTGAGATTGGTCTTGAGAGAGGGATGGATGTGGGGGGTGTGGTGTTCAAGTTGGAGGAACAAATGAAGAGGTTGAAGGTAAGGGGTAAGGAGAAAGGGTATTTGAGGGCATCATTTTGGGAAGCTTATTCTCAGGCTTATAGGACAGAGAGGGCCATGAAGAGGTGGGGAAGGAAGATTCCTACTGCTGAGGCTGTGGTTGATAGCATCACTGATGTGGTTGGAGGAGACCACAGGCTGCTTAAGTTTGTGATGGAGGAGTTCAAGAAAAATAGTGGTGGAGTTGTTGAGAGGGACAAAGTTTTCAAGATGGCAAAACAAGTGTTTGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTCTGCAACTCTGCATTGCTGATTAA 1332 0.4602 MREPRQRLPLPKNRYAPKLALQIKIISXSALECFRTATLDGNAESVSGYLERCKSLELLSKTGCLDLSDWVSNGFRGKLPELAEHIGAVEIRRSEISGRGLFATKNIDAGSLILVTKAIAMERSIIMGGVQDLSEDAQLAMWKNFIDKVFEFVGKCPRTRGLINRLSSGENEEELEVPDVGLFRPENVEKDGEVEVDVDMVKLVGILDVNSLTEDAVSANVLRRGNDYYGVGLWLLPSLINHSCCPNARRLHVGDYLVVHASKDLKAGEEVTFAYFDPLCGLSKRKEMSVNWCIHCKCKRCRFEGEVFPKQEIREIEIGLERGMDVGGVVFKLEEQMKRLKVRGKEKGYLRASFWEAYSQAYRTERAMKRWGRKIPTAEAVVDSITDVVGGDHRLLKFVMEEFKKNSGGVVERDKVFKMAKQVFGKVVKKQAMKTLLQLCIAD 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11634g00001 443 Pfam SET domain 98 275 IPR001214 GO:0005515
Vium11634g00001 443 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 29 429 - -
Vium11634g00001 443 CDD SET_SMYD 222 301 - -
Vium11634g00001 443 SMART set_7 87 282 IPR001214 GO:0005515
Vium11634g00001 443 Gene3D SET domain 176 305 IPR046341 -
Vium11634g00001 443 ProSiteProfiles SET domain profile. 87 276 IPR001214 GO:0005515
Vium11634g00001 443 SUPERFAMILY SET domain 88 301 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11634g00001 Vium-Chr11634 6358 8439 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium11634g00001 SET 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11634g00001 - - vum:124820782 868.996