Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11633g00002 ATGAAGCTGAAAACTTACGCTGGTCTCAGTTTCATTGCAACTCTGGCTATTATATATCATGCATTTAACAGTAGGGGTCAATTTTATCCGGCAATGGTGTATCTCTCAACTTCCAAGATCAGCTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGATTTTCTTGGGTTCCCTCCGTGAGGCGGAGGTTGAGAGGCTAAACGAGCAATCGTGGAGGGAAGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAAGACTTCTCTGTCACATTTCTTGCGATGGTCACGGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCGGTGCCCATGTTGTCGCATGTTCGAATTGTATCTTTTATGGGGTTCCTTCTTCTCTTAGACAGCCTTTTCTTATATAGTTCTTTGAAGCATCTGATAGAAACCTGGCAGGCTTCAGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACCACCACCGTGTCAATTTTTGTAAAGTATATTTTCTATGTTAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACTTTTTACCTGGAACTCATTAGGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGATTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCATACATGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGCAGCTGTAGGGCCGCAAGGATCACAGGCTGATGGTCAACGGCAAGGAGCTGGGACAGGCGGTGAAAGCTCAGCTCAAAATGAGGCTACGGATAATTTGAGTAGACATCGAGCCAGACTCCAAGCTGCTGCTTCTGCTGCTTCCATATATGAGAAGTCTTATGTGTACCCTTCTGCAAATTCTTTTGCATGTTCTCCTGGGTACACTCTCCATCCTCCGGTGGCTGAATCTACTAATAAAGACAGTAGTGGAGGGCAGACTTCCGGCGAACAAACACATAGTTGGTTTCTTACCACTGGTGGACCAACAAATGAATCTTATCCTCCAATGCAATACTTCCATCTTCTACCCTCCCAACCAAATGCAGCCCTTGTCAATTATGGAAAGGGGTTTGAAAATGATCCAAATATCCCAAGCTCCCATCTGGAAGCATATAGAAAACTCCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTCGAGATTCTGCAGAAGACAAGGTCTGACAGAAGTGTAGATGAGGGCACATCGTCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCTGAATCTGGACGTGCTTATACTGAGGAGATTCAAGATGGAAAAGCGTAA 1638 0.4347 MKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAVGPQGSQADGQRQGAGTGGESSAQNEATDNLSRHRARLQAAASAASIYEKSYVYPSANSFACSPGYTLHPPVAESTNKDSSGGQTSGEQTHSWFLTTGGPTNESYPPMQYFHLLPSQPNAALVNYGKGFENDPNIPSSHLEAYRKLLQCQIQILQNQLEILQKTRSDRSVDEGTSSSDSRGKSVISSSESGRAYTEEIQDGKA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11633g00002 545 MobiDBLite consensus disorder prediction 341 371 - -
Vium11633g00002 545 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 263 338 - -
Vium11633g00002 545 SUPERFAMILY RING/U-box 271 335 - -
Vium11633g00002 545 MobiDBLite consensus disorder prediction 339 375 - -
Vium11633g00002 545 Pfam Ring finger domain 290 329 IPR001841 -
Vium11633g00002 545 MobiDBLite consensus disorder prediction 414 442 - -
Vium11633g00002 545 PANTHER RING ZINC FINGER PROTEIN 1 517 - -
Vium11633g00002 545 Coils Coil 486 506 - -
Vium11633g00002 545 MobiDBLite consensus disorder prediction 518 536 - -
Vium11633g00002 545 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Vium11633g00002 545 CDD RING-H2_synoviolin 288 329 - -
Vium11633g00002 545 SMART ring_2 291 328 IPR001841 -
Vium11633g00002 545 MobiDBLite consensus disorder prediction 505 545 - -
Vium11633g00002 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Vium11633g00002 545 MobiDBLite consensus disorder prediction 415 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11633g00002 Vium-Chr11633 12619 20732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11633g00002 1 531 C3H Transcription Factor Family AT3G16090 64.935 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11633g00002 K10601 - gmx:100816441 924.08