Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11619g00003 ATGTACAACCGTAGATTCAACAAACCGATACAGGTGGCTAACCCAGATGAGCCCGAGCCCGAGCCCGAACCCACCTCAGAACCTGGGCCTGCTTCTCCTTCTTCCTGTGATGACACTAAGACAGAAGCACCGTCACCTAAGAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACGTATCCACCGTCCGATTCGTGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCTCCTTACCCAAGGGGATATTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTGGAGCGAAGCCGTGTGGATCCCACAAAGCTCATAGTCACCTACGCCAACGACCACAACCACTCCGTCCCCCTCCCAAAATCCAATTCTTCCGCCATTTCCGCCGCCGCCTCGCCGGCCGAGTCCGCCGCAAGGTTCCCACCGGAGGAGGAGATGGCCGTGTTCTCGACTCACTCCGATTTTGAACTCGCCGGCGACGCGGCGGTTCTGCTCAGCCAGTACCACTTTCGGTGGTTCGATGACGTGGCGTCCACCGGCGTCCTCGAGAGCCCGATCTGCGGCGAGGTGGATGATGTGGCGATGCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGATCTCGACGAGTTGCCGGAGTGCTCGGTGGTTTTCCGGCGGGGGAATATTCCGAGGAGCAGCGCGATCCGGTGCGGTTGCATCACAGGATAA 768 0.5859 MYNRRFNKPIQVANPDEPEPEPEPTSEPGPASPSSCDDTKTEAPSPKKRREMKKRVVTIPIGDVDGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYANDHNHSVPLPKSNSSAISAAASPAESAARFPPEEEMAVFSTHSDFELAGDAAVLLSQYHFRWFDDVASTGVLESPICGEVDDVAMPMREEDESLFADLDELPECSVVFRRGNIPRSSAIRCGCITG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11619g00003 255 ProSiteProfiles WRKY domain profile. 77 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11619g00003 255 MobiDBLite consensus disorder prediction 15 29 - -
Vium11619g00003 255 Gene3D WRKY domain 64 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium11619g00003 255 SMART WRKY_cls 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11619g00003 255 MobiDBLite consensus disorder prediction 1 77 - -
Vium11619g00003 255 Pfam WRKY DNA -binding domain 78 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11619g00003 255 SUPERFAMILY WRKY DNA-binding domain 72 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium11619g00003 255 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 20 235 IPR044810 GO:0003700
Vium11619g00003 255 FunFam WRKY transcription factor 65 63 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11619g00003 Vium-Chr11619 79685 82012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11619g00003 21 242 WRKY Transcription Factor Family AT3G58710 51.250 6.00e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium11619g00003 WRKY 8.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11619g00003 - - vra:106778551 475.707