Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1160g00001 ATGGCAACAAAGCTACTATGCCTTTCTCTGCTCATTCTAAATCTGCTCCTTCACATGTCTACCACCGCCGAATCCGCAGCTGCGACAACAGACTTTATCAAGTCCTCATGCAAGGCGACAAGGTACCCCGTGGCGTGCGTTGAAAGCCTCTCAGGCTACGCCAGCAAGATTAGGCAGAGCGAGGAAGAACTAGCCAGCACTGCCCTGAGCGTGAGCGTATCCAAGACTCGATCATGCGTATCATCTCTTGAGAAAATGGAGAAGACGAAGGGACTGAAAGTAAGAGAGAACAATGCGGTGCAAGATTGCATAGAGAACATGAATGATAGTGTGGACAATCTTAACCGATCGCTGAAGGAGCTGGGCCTCCTGGGTAACCGGAAGGGGAAGGATTCCCGGTGGCACATCAGCAATATTCAGACTTGGGTTAGTGCTGCTATGACTTATCAGGACACGTGTCTTGACAGCATTGATGATGCTAATTCCAAGTCTTCCATTAAACCTAAGGTTGTCGATGCTTCTCAAGTCACCAGTAATGCTCTTGCATTGGTTAATCGTTTTGCCTCCAAGTACCGCACTTAG 582 0.4863 MATKLLCLSLLILNLLLHMSTTAESAAATTDFIKSSCKATRYPVACVESLSGYASKIRQSEEELASTALSVSVSKTRSCVSSLEKMEKTKGLKVRENNAVQDCIENMNDSVDNLNRSLKELGLLGNRKGKDSRWHISNIQTWVSAAMTYQDTCLDSIDDANSKSSIKPKVVDASQVTSNALALVNRFASKYRT 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1160g00001 193 FunFam Pectinesterase inhibitor 3 28 188 - -
Vium1160g00001 193 SMART PMEI_2 28 183 IPR006501 GO:0004857
Vium1160g00001 193 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 183 - -
Vium1160g00001 193 Pfam Plant invertase/pectin methylesterase inhibitor 31 183 IPR006501 GO:0004857
Vium1160g00001 193 Coils Coil 104 124 - -
Vium1160g00001 193 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 188 IPR035513 -
Vium1160g00001 193 CDD PMEI-like_3 35 189 - -
Vium1160g00001 193 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 187 IPR035513 -
Vium1160g00001 193 NCBIfam pectinesterase inhibitor domain 8 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1160g00001 Vium-Chr1160 8569 13069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1160g00001 33 184 Carbohydrate Esterase AT3G14310 28.025 1.28e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1160g00001 - - var:108341180 333.183