Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11602g00001 ATGGTTGTANAACCTCCAAGAACATTTGTCAGTTTGGAGGGGAATACTGATATATGTCTGATAGGATCATGCAAGAAGAAGAAGAATATTGTTACATTAGTTGCAACTATTGTAGCATCAATTGTGTTCTCTATCATAATAGTGGGCATAATTATGATTTGGAGATCACTTAGAAGAAATGAAGGAGGGATATCTTCAACTTCAAGAAAAGATCAACTAAAATTAAAAAATCAAACATTTTCTTACTCGGAGATTCATAATATTACCAACGGTTTCGAAACAATGATTGGAAAAGGTGGATTTGGTGAAGTTTACTTAGGCACTTTGCAAAGTGGTGAACGAGTTGCTGTAAAGAAACTCTCTCTGTCATCAAAGCAAGGTTACAAGGAGTTTAAGTCAGAGGCAAAGTTTCTAACGCTTGTTCATCATAGAAATGTGGTTTCTTTTGTGGCGTATTGTGATGAAGGTGATGCTAAAGCACTTATTTACGAATATCTATCAAAAGGAAACCTCCAAGAACATTTGTCAGAGAAAAGCTCAAGTGTCTTGGGATGGAAAGAGAGAGTTCAAATTGCCTTAGATGCAGCAAGTGGATTGGATTATCTGCATAATGGATGTAAGCCACCTATAATTCATAGAGATCTGAAAGGTTCCAACATCCTACTAGATGAAAATATGCATGCCAAGATTTCAGACTTTGGATTGTCTAGAAATTTTGCAAATGACAATGACACTCATGTCTTAACTAATTACCCAGGTGGCACACCAGGTTACCTTGATCCTGAATTTCACTCCTCGGGTACTCTTAATAAAAGAAGTGATGTTTACAGTTTCGGGGTAGTTTTGTTAGAGCTAATTACAGGTCAAGCAGCAATAAGAGGAACTCCTGAGAAACCAAGTCACATACATACTTGGGTTAAAGAAAAACTTGAAGGTGGAGATATTAAAGCAATAGTTGATCCAAGATTAGAAGGAAATTACCATGTTGCTTCAGCTTGGAAATTTTTGGAAATAGCCATGTCTTGCCTTCCTGATATTGCCATCCAAAGGCCTGACATAAGCCATGTAACCTCAGAACTGAAGGATTGTTTGCATTTGGAAGCATCCCTTCAAAGGACTGTGAGCAACAACAGGGATTCATTCCTCATGGATTCTGTGCTGATTGATTTCAGTGAATCTGATATATGTCCAAATCCTAGGTAG 1203 0.3732 MVVXPPRTFVSLEGNTDICLIGSCKKKKNIVTLVATIVASIVFSIIIVGIIMIWRSLRRNEGGISSTSRKDQLKLKNQTFSYSEIHNITNGFETMIGKGGFGEVYLGTLQSGERVAVKKLSLSSKQGYKEFKSEAKFLTLVHHRNVVSFVAYCDEGDAKALIYEYLSKGNLQEHLSEKSSSVLGWKERVQIALDAASGLDYLHNGCKPPIIHRDLKGSNILLDENMHAKISDFGLSRNFANDNDTHVLTNYPGGTPGYLDPEFHSSGTLNKRSDVYSFGVVLLELITGQAAIRGTPEKPSHIHTWVKEKLEGGDIKAIVDPRLEGNYHVASAWKFLEIAMSCLPDIAIQRPDISHVTSELKDCLHLEASLQRTVSNNRDSFLMDSVLIDFSESDICPNPR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11602g00001 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vium11602g00001 400 Gene3D Phosphorylase Kinase; domain 1 72 165 - -
Vium11602g00001 400 CDD STKc_IRAK 96 361 - -
Vium11602g00001 400 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Vium11602g00001 400 Gene3D Transferase(Phosphotransferase) domain 1 166 386 - -
Vium11602g00001 400 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 166 373 - -
Vium11602g00001 400 SMART serkin_6 90 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11602g00001 400 FunFam Leucine-rich repeat receptor-like protein kinase 67 165 - -
Vium11602g00001 400 SUPERFAMILY Protein kinase-like (PK-like) 73 359 IPR011009 -
Vium11602g00001 400 Pfam Protein tyrosine and serine/threonine kinase 93 295 IPR001245 GO:0004672|GO:0006468
Vium11602g00001 400 ProSiteProfiles Protein kinase domain profile. 90 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11602g00001 400 PANTHER OS07G0107800 PROTEIN-RELATED 16 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11602g00001 Vium-Chr11602 2680 12034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11602g00001 10 380 Receptor kinase-like Gene Family AT2G04300 48.825 4.76e-112 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium11602g00001 PK_Tyr_Ser-Thr 9.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11602g00001 - - vum:124820758 778.089