Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium115g00002 ATGAAAAAGAATCTTTGCCCTGAAAGCGAAAGTGTCTCAGCCCAGAAGAAGAGAGAGATAATGGAAGATCTTGTTAAGGGCCATGAAGCTGCTACTGAACTAAGACTTCTGCTTCAGAACCCCTTTGGGACTGAACCCTCTCTCTCTTCTCATCACCTCATAGCCAAGGTGCTCAGATCTTTCACACAAGCTCTTACTATTATCAATTCTTCCCCTTTGGCACCTGCTTCTGCAGATGGGCTGGCTCATCGGAATCTCCTGTTTTCCGGCGAAAATGGGCCGTCTGTTCCCCGTTCCGGCAACTGTCCGACATCTGGAGATTGCAGTGAGAAGAGATCCAAAAAGGGTGGGAGAGGTCGCTACAACAGAAGAAAGAGTCTCCTCACATGGACTGAGCTATCTTACACTACTGATGACAATCATGCCTGGAGGAAGTATGGACAAAAGAAAATTCTGAATTCTGAATTCCCTAGGGGTTACTTCAGGTGCAGTCATAGGTATGATAAAGGTTGCAAAGCAACGAAACAAGTGCAGAGGGATGAACAGTATCCTCAGATGTATCAAACTACTTACATTGGCTCTCACACATGCAATGCCATCTCCGAGATTGTGACAAACTCAACAGATTCTTCCAATTGGGAATCTTATCTTTTGAATTCTGATCATGATTCTGTTTATGAACCCCTAATAGCTCACCAACCTTAA 705 0.4454 MKKNLCPESESVSAQKKREIMEDLVKGHEAATELRLLLQNPFGTEPSLSSHHLIAKVLRSFTQALTIINSSPLAPASADGLAHRNLLFSGENGPSVPRSGNCPTSGDCSEKRSKKGGRGRYNRRKSLLTWTELSYTTDDNHAWRKYGQKKILNSEFPRGYFRCSHRYDKGCKATKQVQRDEQYPQMYQTTYIGSHTCNAISEIVTNSTDSSNWESYLLNSDHDSVYEPLIAHQP 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium115g00002 234 Gene3D WRKY domain 124 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium115g00002 234 SUPERFAMILY WRKY DNA-binding domain 134 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium115g00002 234 SMART WRKY_cls 137 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium115g00002 234 MobiDBLite consensus disorder prediction 92 107 - -
Vium115g00002 234 ProSiteProfiles WRKY domain profile. 138 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium115g00002 234 MobiDBLite consensus disorder prediction 90 120 - -
Vium115g00002 234 Pfam WRKY DNA -binding domain 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium115g00002 234 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 208 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium115g00002 Vium-Chr115 15910 24537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium115g00002 16 224 WRKY Transcription Factor Family AT3G56400 40.566 4.44e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium115g00002 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium115g00002 - - vum:124822494 470.314