Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00092 ATGAAAAACGGATTCTATGAAAAGTTGGAGTCGGAGCTTCAAGGTTCAAGGAATACTTATTATGTCGGTGGGCTTATGGCGTTTGAGCTTACAGAGAGAAATTCATCTTATGCCATGGCTTTGATCTGCAAGAAATTTTCAACTAGCAGTGATTTGCCAGTGTTTCCTTACACTAAGAGTTTGTTTCCCTTGCAAACTGAGTTCCAGAAAAAGGAGCCTAAAGAACTAGGTGAATTGCCCGGAGTGCAGTTTCCAAATTTGCCAACTTTGAATAGCTATTTAAAGCATTGGGGAACTGATCCAGTCACTCAAAACAGAACTCTTTACACTTGGATAAATGAAGGAGGGACAGTGGGTGGCAAGAGGACATATAGAGAACAACACTTAAATGCTTCTTGTATTGCACATAAGCTCTTAACAAGTGAAAAGCCAGTGATCAAGCCTGGTGACAGGGTTCTCCTAGTCTATGTTCCTGGCCTAGATTTCATTGATGCCTTCTTTGGATGTCTAAGAGCAAAAGTTTTACCAGTCCCAGTTCTTCCCCCGGACCCCATGCAAAGAGGTGGACAAGCACTTCTAAAGATTGAGAACATTGCCAAGTCATGTGGCATAGTGGCGATTTTATCAACAGTAGCTTATCATTCAGCAGTGCGTGCAGGTTTAGTGAAAAGTTTTATCTCATTAACTGGAAAGATTGGGAAACCGCCAGCTCAGTGGCCTAAACTTCCTTGGCTGCACACTGACACTTGGGTCAATAATAACTCAAGAAATTTGGCTTTGGAAGATGCAGGTGATCAATGTGAATCCAAGCCTGGTGATTTATGTTTCTTGCAGTTTACCTCAGGTTCAACTGGTGATGCTAAAGGAGTCATGATAACACATGGAGGGCTTATTCACAATGTGAAGTTGATGAAAAGTATATACAAGAGCACCTCAAGGACCATGCTAGTGAGTTGGCTTCCTCAGTATCATGACATGGGGCTGATTGGAGGACTTTTTACAGCTCTTGTTAGTGGTGGATCTGCTGTGCTTTTCTCACCGATAACATTTATTAAGAAACCACTCTTGTGGCTTGAAACCATGAGCAAGTATCAAGCAACTCACAGTGCTGGCCCCAACTTTGCTTTTGAGTTGGTGGTTCGAAGGTTAGAGTCTGAAAAAGACAAGCTTCAGAATTTAAACCTTTCATCCATGATTTTTCTCATGGTTGCCGCTGAGCCAGTGAGACTGAAGACCCTGAAAAGGTTTCTTGATTTAACTGCTTCTTTTGGCTTATCTCAGAAGGTGATGGCTCCAGGATATGGCTTAGCAGAAAATTGTGTGTTTGTCAGTTGTGCATTTGGTGAAGGGCGTCCTATTCTTGTTGACTGGCAGGGAAGAGTTTCTTGTGGATACATTCACCCAGGTGATGCAGATATTGACATTAGAATAGTTGATCCAGAGAATGGTGAAGAGCTTCTAGAAGATGGAAAGGAAGGAGAAATCTGGATAAGTAGTCCAAGTGCTGGAATAGGATACTGGGGAAAGGAAGAACTGAGTCAGAAAACTTTTAGAAATGAGCTTCAGAACCATCCTGGACGAAACTACACAAGAACTGGAGACTTGGGAAGAATAATTGATGGGAAGCTATTCATTACCGGGAGAATCAAGGATCTTATCATTGTGGCTGGAAGAAATATCTACTCAGCAGATGTTGAGAAAACAGTGGAGAGTTCATCTGAATTTCTTCGTCCTGGATGTTGTGCAGTCATTGGTGTCCCTGAGGAGGTTCTATCAACAAAGGGGATTACCCTGCCGGATGGATCTGACCAAGTTGGCTTGGTTGTGGTTGCTGAAGTAAGGGATGCTAAAGCGGTGAGCAAAGATGTGATCGAGCATATTCAGACTCGTGTGGCAGAAGAACATGGAGTCAGTGTTGCTTCTGTCAAGCTGATCAAGCCAAGAACCATCAGCAAAACAACATCAGGAAAAATCAAGAGATTTGAATGTCTCAAACAGTTTGCAGATGATTCACTGAATTTGGTGCCTCAACCTATTCAGACAAGGAGATCACTCTTAAGATCCTTTACTACAGGAACATGCACAGAAGGAAGAACACCCCGGGCCCAGCTGGTGAGAAGTAGTAATCCTCTGCCTATTCCAAGAATCAGTAACAAGGAAATTGTGGAGCACTTGAAAAGGCTTGTTTCTGAGCACTCAGGAATCCCAGTCAAAGATATCTCAGTCACAGAAAACATGTCTGCATACGGAATTGATTCAATCGGAGTGGTTAAAGCAACTCAAAAACTCTCAGATTTCCTGGGTGTGCCAGTTGCAGCTATAGATGTCTTCACTGCATCATGCATTCAAGAATTGGCTAACTTCTCCGAGAATCTTATGTTAAAGTCTCAACCTCAACTTATGAGCAATTCATCCCATGCTCTAGCTGCTGAAATTGACACCACTGATATAGTTGTGGATGTGTCCAGGTCTCGCCAATGGGGTATCCGTTTACTCCAACTCCTAGCACTAATTTATATTTCTGTCATGCTGTTTTCTCCTGCTTATCTATCCATCACTGCTTTTCAAAGTTTCATACCAAATGCCAGCGAATCGGTATATGGAATGCCTTGGTCAAACTATTTGCTTTCCTTGACTTTGGCACCTCTTTCTTGGATCCTTTGCATGGTTTCTACTTGCATTTGCATTTCACTTATGGGGAATTCTTTCTTGAGGCCAAACTATGCCCTGACACCCGAAATATCCATCTATTCAATGGATTTTGTCAAGTGGTGGGCGCTGTATAAAGCTCAGGAAATATCTTCAAAAGTTTTGGCAACACACCTCAGAGGAACAGTGTTTCTGAAATACTGGTTTGAGATGCTTGGTGCAAGAATTGGATCCTTAGTTTTGCTGGACACAGTTGATATCACAGACCCTTCTCTAGTTTCAATTGGAGATGAAGTTGCCATTGCTGAGGGGGTTTTGGTTCAAAGCCATGAGGTGAAGAATGGAATTCTAAGTCTCCTCCCTATTAGGATAGGTAAAAACTCTTCAATTGGGCCTTATTCTACCATTCAGAAAGGAAGTGTGATTAAAGAAGGATCTGAAGTAGAACCCCTGCAAAAGGTTGAAGGAGGCCAACATGTGCCTAAACCTGCTAAGCTTAATAACGTTAAAGAGGTCAGTACATGCAAATTGCTGAAATAA 3189 0.423 MKNGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALICKKFSTSSDLPVFPYTKSLFPLQTEFQKKEPKELGELPGVQFPNLPTLNSYLKHWGTDPVTQNRTLYTWINEGGTVGGKRTYREQHLNASCIAHKLLTSEKPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVLPVPVLPPDPMQRGGQALLKIENIAKSCGIVAILSTVAYHSAVRAGLVKSFISLTGKIGKPPAQWPKLPWLHTDTWVNNNSRNLALEDAGDQCESKPGDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMKSIYKSTSRTMLVSWLPQYHDMGLIGGLFTALVSGGSAVLFSPITFIKKPLLWLETMSKYQATHSAGPNFAFELVVRRLESEKDKLQNLNLSSMIFLMVAAEPVRLKTLKRFLDLTASFGLSQKVMAPGYGLAENCVFVSCAFGEGRPILVDWQGRVSCGYIHPGDADIDIRIVDPENGEELLEDGKEGEIWISSPSAGIGYWGKEELSQKTFRNELQNHPGRNYTRTGDLGRIIDGKLFITGRIKDLIIVAGRNIYSADVEKTVESSSEFLRPGCCAVIGVPEEVLSTKGITLPDGSDQVGLVVVAEVRDAKAVSKDVIEHIQTRVAEEHGVSVASVKLIKPRTISKTTSGKIKRFECLKQFADDSLNLVPQPIQTRRSLLRSFTTGTCTEGRTPRAQLVRSSNPLPIPRISNKEIVEHLKRLVSEHSGIPVKDISVTENMSAYGIDSIGVVKATQKLSDFLGVPVAAIDVFTASCIQELANFSENLMLKSQPQLMSNSSHALAAEIDTTDIVVDVSRSRQWGIRLLQLLALIYISVMLFSPAYLSITAFQSFIPNASESVYGMPWSNYLLSLTLAPLSWILCMVSTCICISLMGNSFLRPNYALTPEISIYSMDFVKWWALYKAQEISSKVLATHLRGTVFLKYWFEMLGARIGSLVLLDTVDITDPSLVSIGDEVAIAEGVLVQSHEVKNGILSLLPIRIGKNSSIGPYSTIQKGSVIKEGSEVEPLQKVEGGQHVPKPAKLNNVKEVSTCKLLK 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00092 1062 Gene3D - 712 792 IPR036736 -
Vium1159g00092 1062 SUPERFAMILY Trimeric LpxA-like enzymes 943 1045 IPR011004 -
Vium1159g00092 1062 Gene3D - 78 549 IPR042099 -
Vium1159g00092 1062 Gene3D - 1 42 IPR036188 -
Vium1159g00092 1062 Gene3D - 550 678 IPR045851 -
Vium1159g00092 1062 Gene3D Hexapeptide repeat proteins 956 1058 - -
Vium1159g00092 1062 ProSiteProfiles Carrier protein (CP) domain profile. 719 793 IPR009081 -
Vium1159g00092 1062 ProSitePatterns Phosphopantetheine attachment site. 748 763 IPR006162 -
Vium1159g00092 1062 SUPERFAMILY ACP-like 716 793 IPR036736 -
Vium1159g00092 1062 CDD FAAL 105 669 IPR040097 GO:0008610
Vium1159g00092 1062 ProSitePatterns Putative AMP-binding domain signature. 277 288 IPR020845 -
Vium1159g00092 1062 Pfam AMP-binding enzyme 118 555 IPR000873 -
Vium1159g00092 1062 Pfam Phosphopantetheine attachment site 725 788 IPR009081 -
Vium1159g00092 1062 SUPERFAMILY Acetyl-CoA synthetase-like 99 674 - -
Vium1159g00092 1062 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 12 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00092 Vium-Chr1159 456665 459967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00092 273 588 Monolignol Biosynthesis Gene Families AT1G20480 26.183 3.62e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00092 - - vun:114184777 2026.52