LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1159g00088	ATGGCCGAAATGGAAGAAATTGGACCTGATGTCTGTTCGGATTTAGAAGTTGATGATATTAGATGCCCCAATATAGCAGAGAAAGATGTCAGTGATGAAGAGATTGAAGCAGAAGAATTGGAGCGGCGGATGTGGAAGGATCGAATCAAACTCAAAAGGCTAAAGGAAAGACAGAAGCTGGCGATTCAGCAAGCTGCAGAGAAGCAAAAGCCAAGGCAGTCCAGTGATCAAGCTCGTAGGAAGAAAATGTCAAGAGCACAGGATGGGATTCTGAAGTATATGCTGAAGCTTATGGAAGTCTGCAAAGCTCGTGGATTTGTATACGGGATCATTCCTGAGAAGGGAAAGCCGGTTAGTGGTTCCTCTGATAACATTAGAGCATGGTGGAAGGAGAAGGTAAAGTTTGATAAGAATGGCCCTGCAGCTATAGCCAAGTATGAAGCTGAGTGTCTTGCTATGAGTGAGGCCGATAAAAGCCGAAACGGTAACTCGCAGAGCATTCTCCAAGACCTGCAAGATGCAACACTTGGATCACTTTTGTCTTCTTTGATGCAACATTGTGATCCTCCTCAGAGGAAGTATCCATTGGAAAAGGGTGTACCTCCACCATGGTGGCCAACTGGTAATGAAGATTGGTGGTCACAGTTGAATTTACCTCATGGGCAGAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAAGTGGGAGTGCTCACTGCTGTTATAAAGCACATGTCACCTAATATTGCAAAGATAAGGAGGCATGTTCGGCAGTCAAAATGCTTGCAGGACAAGATGACAGCAAAGGAAAGTGCAATTTGGTTGGGGGTATTAAGTCGAGAAGAAGCTCTCATTAGGCAGCCTAGTAGTGACAATGGTACATCTGGAGTAACTGGAATGCTACCTGGTGTTCCTGCTGAGAATAAGCAAGCTGCTACTAGTAGTGCAAGCAACTATGATGTCGATGGTACTGATGATGGCATTGGTTCTGTTTCGTCTAAAGAGGATAGGAGAATTCAGATTGTGGAAACTGAACCACCAGTTAACCCGCGCAGGGTTAGGAAGCATGTCCAAGATAGAGATCAATCTAAGCAGCGACCGAGAAAACTCCGAGTGACATCAAGGACTGTTGACAAACCACCAGCACAATCTGACAATGAAGTTTTACATGCTGAGCCAAGAAGTAAAGGGCTCAATATTAACCAGACAGGAGCAGAAGTAGTACGAATCCAGATTCATGGAAATGAACAGTCCAATGAGACAGATTCTGCTGCAAGGCCACTGGAAAAGGAGCTTGAGGTGCCTGCACAACTACCTGCACCCGAGTTTGATCATTACTCTTATCTACATACAAACAACTTAATTTCCACAGAAAGTATTTATACGAGTGGAAGGCCAATACACTATCCTGAGTTGCAAAACCCTGACATGCAGCATGAACCCACTTATAATCTTTATAATCCCGCAGCAGGGTATGATCCTGGTCATAGGCAGCAGCTACATCCTGGGAACAACAGTGAAGGAAGGCCAGAGATTGATGCAGTTCATGTACAGGCTGTGCATATGAAAGGGGATGAAATTACTGGAGGAGATCTGCAATATTTTGGTAAAGATGCATTTCAGAATGAGCTTGATAGACCTATTGATCACTCTTTCTTTGGATCACCGCTTAGTAGCATGTCATTAGATTTTGGAGGACTTAACAGTCCATTGCATTTAGATGATTTCTTGGGTGATGATGAAATGATACAGTACTTTGGAGCATAA	1776	0.4381	MAEMEEIGPDVCSDLEVDDIRCPNIAEKDVSDEEIEAEELERRMWKDRIKLKRLKERQKLAIQQAAEKQKPRQSSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMSEADKSRNGNSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPTGNEDWWSQLNLPHGQSPPYKKPHDLKKMWKVGVLTAVIKHMSPNIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREEALIRQPSSDNGTSGVTGMLPGVPAENKQAATSSASNYDVDGTDDGIGSVSSKEDRRIQIVETEPPVNPRRVRKHVQDRDQSKQRPRKLRVTSRTVDKPPAQSDNEVLHAEPRSKGLNINQTGAEVVRIQIHGNEQSNETDSAARPLEKELEVPAQLPAPEFDHYSYLHTNNLISTESIYTSGRPIHYPELQNPDMQHEPTYNLYNPAAGYDPGHRQQLHPGNNSEGRPEIDAVHVQAVHMKGDEITGGDLQYFGKDAFQNELDRPIDHSFFGSPLSSMSLDFGGLNSPLHLDDFLGDDEMIQYFGA	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1159g00088	591	PANTHER	ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN	14	578	IPR006957	GO:0003700\|GO:0005634
	Vium1159g00088	591	MobiDBLite	consensus disorder prediction	289	393	-	-
	Vium1159g00088	591	FunFam	Ethylene insensitive 3-like 1	159	295	-	-
	Vium1159g00088	591	Coils	Coil	37	57	-	-
	Vium1159g00088	591	MobiDBLite	consensus disorder prediction	332	378	-	-
	Vium1159g00088	591	SUPERFAMILY	DNA-binding domain of EIN3-like	166	289	IPR023278	GO:0003700\|GO:0005634
	Vium1159g00088	591	MobiDBLite	consensus disorder prediction	61	83	-	-
	Vium1159g00088	591	Gene3D	-	72	148	IPR023278	GO:0003700\|GO:0005634
	Vium1159g00088	591	Gene3D	-	157	296	IPR023278	GO:0003700\|GO:0005634
	Vium1159g00088	591	Pfam	Ethylene insensitive 3	38	285	IPR047091	GO:0003700
	Vium1159g00088	591	FunFam	Ethylene insensitive 3-like 1	72	150	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1159g00088	Vium-Chr1159	437817	440964	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1159g00088	16	591	EIL Transcription Factor Family	AT1G73730	53.794	0.0	544

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	EIL	Vium1159g00088		EIN3	7.3e-127	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1159g00088	K14514		-	gmx:100812970	1016.91