Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00073 ATGGATTCTTCTGTAGTTGTGGGTAGCTCAATTTCCGAGCCTCATCATGAGATGGAATTTGAATCTCATGAAGCTGCATATACATTTTACAAAGAATATGCTAAGTCTGCAGGGTTTGGCACTGCTAAGCTGAGCAGCCGGCGATCTAGGGCATCCAAAGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAAGCTAGTATGCATGTAAAGAGAAGGCAAGACGGTAAATGGTATGTCTACAGCTTCGTGAAGGAGCATAATCATGAACTTTTACCAGCTCAAGCTCATTTTTTTCGGAGTCACAGGAGTTCTGATCCACTAGGTAATGATGTTCGAGTGCGTAGGCGAAAAACCTCAAATGCAGTTTCTAAATTATTTAGTGCATATCAGAATGTTGATTGCTTAGAGAACTTTGTGAAACATCAACATGATAAAGGACGGAGTTTGATTCTGGAAGCAGGACATGCTCAATTACTTCTTGAGCTCTTTATGCACATGCAAGAAGAGAACCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTAAGAAATGTGTTCTGGGTTGATGCTAAAGGCTTGGAAGATTTTACATACTTTTCTGATGTTGTCTCTTTTGACACAACATATTTTACTAGTAAATATAAAATACCATTGGTACTTTTCCTTGGAGTAAACCATCACATTCAACCAACATTGCTTGGTTGTGCATTGATTGCTGATGAGACAATATTTACCTATGCTTGGTTACTGCAAACATGGCTGATAGCAATGGGGGAGCGAGCACCACAAGTGCTTCTGACTGACCAAAATGACGCTATTAAAGCAGCTGTTGCCACTTTTCTTCCAGGAACACGCCATTGTTTTTGTTTGTGGCATATTTTGGAAAAGGTACCAAAGCAACTACAAATTTTAGGCGCATGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATATACAAATCATGGAATGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGCTTTAGCCTTGGAGATGTTGAGTGGGTTCGATCCTTATATGATGACCGCACATATTGGGTGCCAACATTTATGAAAGATATTTCCTTTGCTGGCTTGTCTACTAGTTCTCGTTCTGAATGTTTAAATTCATTGGTTGACAAGTATATCCATGTTGATTCTTCTTTGAGAGAATTTATAGAACAATATAGAGTGATTCTTGAAGACAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCCTGGCATGAAACACCTGACCTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGCTGTTGGTCTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTGTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGACGGCGTGACTACTGCTTATACTGTGAAAGATTTTGAAAATAATCAAAACTATTTGGTAGAATGGAACACGTCCAGCTCAGATATATGCTGTTCATGTCGTTTGTTTGAATATAAAGGTTATCTCTGCAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGAAAAGATGGACAAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAGTTGGAAGAGGTTCAATCAAAGGTGCGGCGATTCAATGATTTGTGTAGGCGGGCCATTATATTAGGCGAAGAAGGTTCTTTATCACAGGAAAGTTACTACATGGCCTTAGGTGCCATCAGTGAGGCACTAAAACAATGTGTAAGTTTTAGCAACCCTGTTGAGAATGGTATGAGACCTGATTCCTCAGGTACCCATGTTTGTAATGTTGAAGAAGAATATCAATCTATTATTACATCTAACAATAAGGCCCCTGGTCCGAAACTGAATACGGGAAATAAAGCTGTGAGAACTGGTGTACCTTGTAGGAATCAAGGAAGTATTGAAAACAGTGGAGGCGATAAAGGAAAGGTATCTCTCGTTGAAGCAGGTAGTGGGAAAGATGGTTTTCAACATATGGAGCTTACTGATCCGAGATCACAGGGTGTCATGCCAATGCAGTTTCACAATGTGAGAGGCCAGGTGGCAATTGAATGTAAGAGAGTTAGTGCTAACTTGAGTATCCTTATATTCTAA 2217 0.3915 MDSSVVVGSSISEPHHEMEFESHEAAYTFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLGNDVRVRRRKTSNAVSKLFSAYQNVDCLENFVKHQHDKGRSLILEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFTYFSDVVSFDTTYFTSKYKIPLVLFLGVNHHIQPTLLGCALIADETIFTYAWLLQTWLIAMGERAPQVLLTDQNDAIKAAVATFLPGTRHCFCLWHILEKVPKQLQILGAWHDSFMEKFNKCIYKSWNEEQFEKRWWKLVDSFSLGDVEWVRSLYDDRTYWVPTFMKDISFAGLSTSSRSECLNSLVDKYIHVDSSLREFIEQYRVILEDRHEEEAKANFDAWHETPDLKSPSPFEKQMLLVYTHEIFRKFQVEVLGAAACHLKKESDGVTTAYTVKDFENNQNYLVEWNTSSSDICCSCRLFEYKGYLCRHAIVVLQMSGVFSIPPKYILKRWTNAAMSRHPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSQESYYMALGAISEALKQCVSFSNPVENGMRPDSSGTHVCNVEEEYQSIITSNNKAPGPKLNTGNKAVRTGVPCRNQGSIENSGGDKGKVSLVEAGSGKDGFQHMELTDPRSQGVMPMQFHNVRGQVAIECKRVSANLSILIF 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00073 738 SMART 26again6 517 544 IPR006564 GO:0008270
Vium1159g00073 738 Pfam FAR1 DNA-binding domain 28 114 IPR004330 -
Vium1159g00073 738 Pfam SWIM zinc finger 511 540 IPR007527 GO:0008270
Vium1159g00073 738 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 615 IPR031052 GO:0006355
Vium1159g00073 738 Pfam MULE transposase domain 227 320 IPR018289 -
Vium1159g00073 738 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00073 Vium-Chr1159 369187 373771 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium1159g00073 MULE 5.6e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00073 - - gmx:100805273 1327.38