Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00069 ATGGCAGAGGAACTTGACCTCGACAACCTTAAGGTACTGAAAGTTTTAGGCAAAGGGGCCATGGGCACTGTGTTTCTCGTGCAACACAACTCCGGCCACGTGGCGCTCAAAGTGGTCGACAAATCATCATCCCTCCACGACGGTGCTCGCCGCGCCCACTGGGAAATCACTGTTCTCTCTCGCTTATCCCACCCCTTCCTCCCCACCCTACTGGGTTCCTTTGAGTCCAACAACTTAATGGGCTGGGCCGTCCCCTACTGCCCTGGCGGCGACCTCAACCACCTCCGCTATCGCCAAACGGATCACATATTCTCCCCCGCCGTCGTCCGCTTCTACCTCGCCGAGATCCTCTGCGCTCTCCACCACCTTCACTCCATGCACATCGTGTACCGCGACCTCAAACCCGAAAACGTCCTCATTCAACAATCCGGCCACGTCACTCTCACCGACTTCGACCTCTCCCGAACTCTCTCTCCCACCAAAACCAACACCTCCTCTCCCTCCAACTCCCACATTCCTGACACCGCCCCGCGCAAGCCCCGCCGCAACTTCCGCTGGGCCCCACTCACGAAGACCCCCAAGTCCGCCCGAGTCACCCCCGCAGCTCGCCGCGCCGCGCCAAGCTTCGAGCGCTCGAACTCGTTCGTGGGCACCGAGGAGTACATCGCGCCGGAGGTCCTCCGAGGCGAGGGGCACGGCTTCGCCGTTGACTGGTGGGCCCTCGGCGTCCTCGCCAACGAGATGGTGTACGGAACCACGCCGTTCAAGGGGAGGAATCGCAAGGAAACGTTTCGCAACGTGTTGTTGAAGACGCCCGAGTTTGTCGGGAAGAAAACAGCGTTGACGGACCTAATATCTCGGTTGCTAGAAAAGGACCCTTCCAAGCGTTTGGGTTATGTTCGCGGCGCCACCGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTTAAATGGGACCTACTAACGGAGGTTGTGCGGCCGCCGTTTATTCCTTCAAGAGAAGAGGTTACGAAGCCTTTCGCCGATGGACTTGACGTAAGGGGATACTTTCAGAGTCTGAAATCTCCACCGTCTTTGCCCCCCTCGCCGTTACGGTCACCGTCGTGTGAGTTTCAGAAAAACGTTTCTTTACCGGAATTCTGA 1140 0.5825 MAEELDLDNLKVLKVLGKGAMGTVFLVQHNSGHVALKVVDKSSSLHDGARRAHWEITVLSRLSHPFLPTLLGSFESNNLMGWAVPYCPGGDLNHLRYRQTDHIFSPAVVRFYLAEILCALHHLHSMHIVYRDLKPENVLIQQSGHVTLTDFDLSRTLSPTKTNTSSPSNSHIPDTAPRKPRRNFRWAPLTKTPKSARVTPAARRAAPSFERSNSFVGTEEYIAPEVLRGEGHGFAVDWWALGVLANEMVYGTTPFKGRNRKETFRNVLLKTPEFVGKKTALTDLISRLLEKDPSKRLGYVRGATEIKEHEFFRGVKWDLLTEVVRPPFIPSREEVTKPFADGLDVRGYFQSLKSPPSLPPSPLRSPSCEFQKNVSLPEF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00069 379 Pfam Protein kinase domain 11 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1159g00069 379 Pfam Protein kinase domain 212 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1159g00069 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vium1159g00069 379 SUPERFAMILY Protein kinase-like (PK-like) 7 361 IPR011009 -
Vium1159g00069 379 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Vium1159g00069 379 FunFam Serine/threonine-protein kinase OXI1 210 331 - -
Vium1159g00069 379 ProSiteProfiles Protein kinase domain profile. 10 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1159g00069 379 SMART serkin_6 10 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1159g00069 379 Gene3D Transferase(Phosphotransferase) domain 1 91 163 - -
Vium1159g00069 379 Gene3D Transferase(Phosphotransferase) domain 1 210 331 - -
Vium1159g00069 379 Gene3D Phosphorylase Kinase; domain 1 9 90 - -
Vium1159g00069 379 MobiDBLite consensus disorder prediction 157 188 - -
Vium1159g00069 379 MobiDBLite consensus disorder prediction 157 173 - -
Vium1159g00069 379 PANTHER FLIPPASE KINASE 1-RELATED 4 333 - -
Vium1159g00069 379 FunFam Serine/threonine-protein kinase OXI1 91 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00069 Vium-Chr1159 346399 347890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00069 3 379 AGC Kinase Gene Family AT3G20830 58.065 1.00e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium1159g00069 Pkinase 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00069 - - gmx:100802613 541.962