Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00067 ATGACTCACCCCTTTTGCTCCAACGACTTCAATGCCTGGTTTGACCTCAATTCTCCATTCCTTTTCTCTTCTTCTTCATCACCTTGCTCCAACCCTCCATTCTATTTTCCTTCGGCTTTTCATCATCGTCAATTTTCTCCCCCCAAAGAAGCACTTCCTTTCCTTAACCTAAGCCTTGCAAGGGGTGAAGATCTTGAATCTTCCTTCTGTGCCATGGAAGTCAACAGAGAGAAGGAGAGAGAATCAAGCATATCGTCTAATAATAATAATAACTCTTTGGATGATGAAACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAACCACTACTGCTTCTGCTGATTCGACTTCAAACACATACTCAGACAGAGAAAAAGCCATTGCTTGTGAGTATTCTCCTAGTAGAATTAACAAGGGTCAGTATTGGATTCCTACCCCTGCTCAAATTCTCATCGGTCCAACACAGTTCTCCTGCCCCCTTTGTTTCAAGACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTGAGGGGAACTCAACCAACGGCAATGCTTAGACTCCCTTGCTATTGTTGTGCTCCTGAATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGCTGCAAAGCTTTTGCTGTTAGGGGTGATTGGAGGACCCATGAGAAGAACTGTGGGAAGCTCTGGTATTGCTCTTGTGGGTCCGATTTCAAGCACAAAAGATCCCTCAAAGATCATATCAAGGCTTTTGGGAATGGACACAAAGCTTATGGAATCGACTGTTTTGATCATGATGATGAAGCTGGCTCTGAAATTGAGCAAGAAAATGTCAATGAACCTTTAGTTTCAAGTCATGGTTGA 972 0.4331 MTHPFCSNDFNAWFDLNSPFLFSSSSSPCSNPPFYFPSAFHHRQFSPPKEALPFLNLSLARGEDLESSFCAMEVNREKERESSISSNNNNNSLDDETVTVALHLGLPTTTASADSTSNTYSDREKAIACEYSPSRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPECKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCFDHDDEAGSEIEQENVNEPLVSSHG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00067 323 PANTHER ZINC FINGER PROTEIN WIP2 36 313 IPR043584 GO:0003700|GO:0010468
Vium1159g00067 323 FunFam Zinc finger protein WIP2 209 291 - -
Vium1159g00067 323 SUPERFAMILY beta-beta-alpha zinc fingers 222 260 IPR036236 -
Vium1159g00067 323 SUPERFAMILY beta-beta-alpha zinc fingers 129 178 IPR036236 -
Vium1159g00067 323 Gene3D Classic Zinc Finger 155 178 - -
Vium1159g00067 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Vium1159g00067 323 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00067 Vium-Chr1159 333577 335924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00067 1 320 C2H2 Transcription Factor Family AT3G57670 55.440 4.14e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1159g00067 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00067 - - vum:124825208 679.863