Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00064 ATGAATAGTTCGGGTTTGGGTGGTGGCTTTTTGTCTGGTCCCAGCGGGGCGATTTTAGACTTGGAATCTTCATTTCATAGACATCAACAGACTCAACTTGGTCATCCATCTATTACTGGTCAACAGCACTTGAATATCATGGGTGGTCTCGAAAGTGATCACCCCATTGGCCTAATTGAAGTGAAAAATTTGAATGCCGGGTTGAATTTTGGTAAAGGAAAGGCAATTGCTCCTTCCAATAGTAATGAGTTGAGTGAGGAGGATGAACCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGATGGTGGGAAGAGCAAAAAGGGATCTCCTTGGCAGCGAATGAAGTGGACAGATAATGTGGTTAGGCTTCTTATAACAGTGGTGAGTTGTGTCGGTGATGATGGCACTATTGGGGGCATGGATGGTCATAAAAGGAAATCTGTGGTTTTGCAGAAGAAAGGCAAGTGGAAAACAGTCTCCAAGATAATGATAAGCAAGGGTTGCCATGTGTCTCCACAGCAGTGTGAGGACAAGTTCAACGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCTGCATTAATGGATTCAATACCTAACCTGTCAACTAAGATGAAGGATGACGTTAGGAAGATCCTGAGCTCAAAACACTTGTTTTATAAGGAGATGTGTGCCTACCATAATGGGCAAAGAATACCAAATTGTCATGAACTTGATTTACAGGGTTATTCTATGGAGCATGGGAAGGACTCAAGAAGAGAAAATAATGCATCTGAGGATGAAGATGAAGATCACAATGATAGCGAGGATGATGAGTTGGAAGATGAAATTAATATTAATGCACACGAGGATGGAGGGAGGATGCAGGAACAATGTGATAGAAATATATTAAGTGAGGAGGATGGCCATTTTGGCCCACAAACTTCTCGGATGGACAAATTTGAGGTTGAAATGGCAAGAGTTTTTCAAGACCCCGGAAAGTCATTACGCGAACAAAGAGAGTGGATTAAAATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAGCTCTTGAACTTGAGAAACAGCGGCTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGAGAGCTGGAGAGACTGAGATTGGAGAACAAAAGAATGAAATTAGAAAATGAGCGCAGGATCTTGAAACTGAAACAAAAAGAGCTAGAGACAGATTTCAGTACATCTGAAATGTCTTTAGACCCTGCCTCTATAGGAATCCACCGGCCGCAGGGGAGGGAGCATATCAGCTTAGGCAGACAACTGTAG 1347 0.4246 MNSSGLGGGFLSGPSGAILDLESSFHRHQQTQLGHPSITGQQHLNIMGGLESDHPIGLIEVKNLNAGLNFGKGKAIAPSNSNELSEEDEPSYAEEGNCENLDGGKSKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIGGMDGHKRKSVVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPALMDSIPNLSTKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNCHELDLQGYSMEHGKDSRRENNASEDEDEDHNDSEDDELEDEININAHEDGGRMQEQCDRNILSEEDGHFGPQTSRMDKFEVEMARVFQDPGKSLREQREWIKIQMLQLQEQNISYQAQALELEKQRLKWLRYCSKKDRELERLRLENKRMKLENERRILKLKQKELETDFSTSEMSLDPASIGIHRPQGREHISLGRQL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00064 448 Pfam Myb/SANT-like DNA-binding domain 114 239 IPR044822 -
Vium1159g00064 448 PANTHER F16F4.11 PROTEIN-RELATED 1 421 - -
Vium1159g00064 448 MobiDBLite consensus disorder prediction 261 287 - -
Vium1159g00064 448 Coils Coil 354 374 - -
Vium1159g00064 448 Coils Coil 382 418 - -
Vium1159g00064 448 MobiDBLite consensus disorder prediction 76 112 - -
Vium1159g00064 448 Gene3D - 117 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00064 Vium-Chr1159 311560 314124 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium1159g00064 Myb_DNA-bind_4 3.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00064 - - gmx:100798932 782.711