Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00062 ATGATTACGGTTCGAGACTCCCTAACTTCAGGAGCCTTTCATAGTATTTATAAGCATTCAACTACTCAAGCAATGATGATTGATAAACAACAGCACCCAAGGATCGAGCAAAAGCTTGCTGGCCAGCTTCACTTGAGATCCAACTCCAACCTTTCCCCACATGTTGGAACTTGTTACGGAGGTTTGAAAAGGCTAGCTCTGTTTCAGCAGCGATTCTCACTAGCAAATTATTCAAATGCAGGGTTACAGTTCCCTCTCATGCCTGCATGCAAGCCCACAAACTACATGCATTCTGCAGGTTCACCAGTGTTCATCCCATCGCCTTCGGAGAAAAACTGGGGAAGGTTTGCCACTGATTTTCTCATGGGTGGAGTTTCTGCGGCAGTGTCCAAGAGTGCAGCTGCTCCGATTGAGCGTGTAAAGCTTCTCATTCAAAATCAGGATGAGATGATCAAAGCGGGCAGGCTCTCTGAACCCTACAAGGGCATTGGAGATTGCTTTGGAAGAACAATCAAAGATGAAGGGTTTGTTTCATTGTGGAGAGGGAACACTGCTAATGTTATCCGTTACTTCCCAACACAGGCCTTGAATTTTGCATTTAAAGACTACTTTAAGAAGCTGTTCAACTTCAAGAAAGACAGGGATGGATACTGGAAATGGTTTGCAGGGAACGTAGCATCTGGTGGTGCAGCAGGAGCCGTGTCTTCAGTGTTTGTATATTCATTGGATTACGCTCGAACCCGCCTTGCCAGTGATGCCAAGGCTGGAAAGAAGGGTGGAGAGAGGCAATTCAATGGCTTGATCGATGTGTACAGGAAGACTATTCAATCAGACGGCGTTGCTGGCCTCTACCGTGGCTTCAACGTATCTTGCGTTGGAATCATTGTCTACCGTGGTTTATACTTTGGCATGTATGATTCTCTGAAACCAGTGGTCTTGGTGGGAACTTTGCAGTTTCTTGGCTAG 966 0.4607 MITVRDSLTSGAFHSIYKHSTTQAMMIDKQQHPRIEQKLAGQLHLRSNSNLSPHVGTCYGGLKRLALFQQRFSLANYSNAGLQFPLMPACKPTNYMHSAGSPVFIPSPSEKNWGRFATDFLMGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFVSLWRGNTANVIRYFPTQALNFAFKDYFKKLFNFKKDRDGYWKWFAGNVASGGAAGAVSSVFVYSLDYARTRLASDAKAGKKGGERQFNGLIDVYRKTIQSDGVAGLYRGFNVSCVGIIVYRGLYFGMYDSLKPVVLVGTLQFLG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00062 321 SUPERFAMILY Mitochondrial carrier 114 312 IPR023395 -
Vium1159g00062 321 PRINTS Adenine nucleotide translocator signature 116 128 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00062 321 PRINTS Adenine nucleotide translocator signature 219 232 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00062 321 PRINTS Adenine nucleotide translocator signature 160 181 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00062 321 PRINTS Adenine nucleotide translocator signature 193 205 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00062 321 PRINTS Mitochondrial carrier protein signature 284 302 IPR002067 GO:0055085
Vium1159g00062 321 PRINTS Mitochondrial carrier protein signature 119 132 IPR002067 GO:0055085
Vium1159g00062 321 PRINTS Mitochondrial carrier protein signature 182 202 IPR002067 GO:0055085
Vium1159g00062 321 PRINTS Mitochondrial carrier protein signature 234 252 IPR002067 GO:0055085
Vium1159g00062 321 PRINTS Mitochondrial carrier protein signature 132 146 IPR002067 GO:0055085
Vium1159g00062 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 311 IPR018108 -
Vium1159g00062 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 207 IPR018108 -
Vium1159g00062 321 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 109 317 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00062 321 Gene3D Mitochondrial carrier domain 117 318 IPR023395 -
Vium1159g00062 321 Pfam Mitochondrial carrier protein 113 211 IPR018108 -
Vium1159g00062 321 Pfam Mitochondrial carrier protein 218 311 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00062 Vium-Chr1159 308404 311344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00062 26 318 Antiporters AT5G13490 69.388 6.76e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00062 K05863 - gmx:100800843 499.204