Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00061 ATGATGATTGATAAACAACAGCACCCAAGGATCGAGCAAAAGCTTGCTGGCCAGCTTCACTTGAGATCCAACTCCAACCTTTCCCCACATGTTGGAACTTGTTACGGAGGTTTGAAAAGGCTAGCTCTGTTTCAGCAGCGATTCTCACTAGCAAATTATTCAAATGCAGGGTTACAGTTCCCTCTCATGCCTGCATGCAAGCCCACAAACTACATGCATTCTGCAGGTTCACCAGTGTTCATCCCATCGCCTTCGGAGAAAAACTGGGGAAGGTTTGCCACTGATTTTCTCATGGGTGGAGTTTCTGCGGCAGTGTCCAAGAGTGCAGCTGCTCCGATTGAGCGTGTAAAGCTTCTCATTCAAAATCAGGATGAGATGATCAAAGCGGGCAGGCTCTCTGAACCCTACAAGGGCATTGGAGATTGCTTTGGAAGAACAATCAAAGATGAAGGGTTTGTTTCATTGTGGAGAGGGAACACTGCTAATGTTATCCGTTACTTCCCAACACAGGCCTTGAATTTTGCATTTAAAGACTACTTTAAGAAGCTGTTCAACTTCAAGAAAGACAGGGATGGATACTGGAAATGGTTTGCAGGGAACGTAGCATCTGGTGGTGCAGCAGGAGCCGTGTCTTCAGTGTTTGTATATTCATTGGATTACGCTCGAACCCGCCTTGCCAGTGATGCCAAGGCTGGAAAGAAGGGTGGAGAGAGGCAATTCAATGGCTTGATCGATGTGTACAGGAAGACTATTCAATCAGACGGCGTTGCTGGCCTCTACCGTGGCTTCAACGTATCTTGCGTTGGAATCATTGTCTACCGTGGTTTATACTTTGGCATGTATGATTCTCTGAAACCAGTGGTCTTGGTGGGAACTTTGCAGGATAGTTTCTTGGCTAGCTTTGCTCTGGGGTGGCTGGTTACTATCAGTGCAAGCATTTCCTCGTACCCCTTGGATACGGTTCGCAGAAGAATGATGATGACATCGGGTGAAGCTGTGAAGTACAAAAGCTCTTTGGATGCATTCTCGCAAATCGTGAAGAATGAAGGTTCAAAATCTCTCTTCAAGGGTGCCGGCGCAAACATCCTTCGTGCAGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGACAAACTTCAGTTACTTGTTCTTGGAAAGAAGTATGGTTCTGGTGGGGCTTGA 1179 0.4682 MMIDKQQHPRIEQKLAGQLHLRSNSNLSPHVGTCYGGLKRLALFQQRFSLANYSNAGLQFPLMPACKPTNYMHSAGSPVFIPSPSEKNWGRFATDFLMGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFVSLWRGNTANVIRYFPTQALNFAFKDYFKKLFNFKKDRDGYWKWFAGNVASGGAAGAVSSVFVYSLDYARTRLASDAKAGKKGGERQFNGLIDVYRKTIQSDGVAGLYRGFNVSCVGIIVYRGLYFGMYDSLKPVVLVGTLQDSFLASFALGWLVTISASISSYPLDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGSKSLFKGAGANILRAVAGAGVLAGYDKLQLLVLGKKYGSGGA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00061 392 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 85 391 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00061 392 Gene3D Mitochondrial carrier domain 93 388 IPR023395 -
Vium1159g00061 392 Pfam Mitochondrial carrier protein 194 287 IPR018108 -
Vium1159g00061 392 Pfam Mitochondrial carrier protein 296 382 IPR018108 -
Vium1159g00061 392 Pfam Mitochondrial carrier protein 89 187 IPR018108 -
Vium1159g00061 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 295 381 IPR018108 -
Vium1159g00061 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 195 287 IPR018108 -
Vium1159g00061 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 90 183 IPR018108 -
Vium1159g00061 392 PRINTS Mitochondrial carrier protein signature 158 178 IPR002067 GO:0055085
Vium1159g00061 392 PRINTS Mitochondrial carrier protein signature 210 228 IPR002067 GO:0055085
Vium1159g00061 392 PRINTS Mitochondrial carrier protein signature 304 326 IPR002067 GO:0055085
Vium1159g00061 392 PRINTS Mitochondrial carrier protein signature 108 122 IPR002067 GO:0055085
Vium1159g00061 392 PRINTS Mitochondrial carrier protein signature 260 278 IPR002067 GO:0055085
Vium1159g00061 392 PRINTS Mitochondrial carrier protein signature 95 108 IPR002067 GO:0055085
Vium1159g00061 392 FunFam ADP,ATP carrier protein, mitochondrial 93 388 - -
Vium1159g00061 392 SUPERFAMILY Mitochondrial carrier 90 377 IPR023395 -
Vium1159g00061 392 PRINTS Adenine nucleotide translocator signature 169 181 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00061 392 PRINTS Adenine nucleotide translocator signature 92 104 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00061 392 PRINTS Adenine nucleotide translocator signature 300 316 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00061 392 PRINTS Adenine nucleotide translocator signature 195 208 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00061 392 PRINTS Adenine nucleotide translocator signature 136 157 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00061 Vium-Chr1159 308160 310685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00061 2 392 Antiporters AT5G13490 73.724 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00061 K05863 - gmx:100800843 669.077