Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00058 ATGATTACGGTTCGAGACTCCCTAACTTCAGGAGCCTTTCATAGTATTTATAAGCATTCAACTACTCAAGCAATGATGATTGATAAACAACAGCACCCAAGGATCGAGCAAAAGCTTGCTGGCCAGCTTCACTTGAGATCCAACTCCAACCTTTCCCCACATGTTGGAACTTGTTACGGAGGTTTGAAAAGGCTAGCTCTGTTTCAGCAGCGATTCTCACTAGCAAATTATTCAAATGCAGGGTTACAGTTCCCTCTCATGCCTGCATGCAAGCCCACAAACTACATGCATTCTGCAGGTTCACCAGTGTTCATCCCATCGCCTTCGGAGAAAAACTGGGGAAGGTTTGCCACTGATTTTCTCATGGGTGGAGTTTCTGCGGCAGTGTCCAAGAGTGCAGCTGCTCCGATTGAGCGTGTAAAGCTTCTCATTCAAAATCAGGATGAGATGATCAAAGCGGGCAGGCTCTCTGAACCCTACAAGGGCATTGGAGATTGCTTTGGAAGAACAATCAAAGATGAAGGGTTTGTTTCATTGTGGAGAGGGAACACTGCTAATGTTATCCGTTACTTCCCAACACAGGCCTTGAATTTTGCATTTAAAGACTACTTTAAGAAGCTGTTCAACTTCAAGAAAGACAGGGATGGATACTGGAAATGGTTTGCAGGGAACGTAGCATCTGGTGGTGCAGCAGGAGCCGTGTCTTCAGTGTTTGTATATTCATTGGATTACGCTCGAACCCGCCTTGCCAGTGATGCCAAGGCTGGAAAGAAGGGTGGAGAGAGGCAATTCAATGGCTTGATCGATGTGTACAGGAAGACTATTCAATCAGACGGCGTTGCTGGCCTCTACCGTGGCTTCAACGTATCTTGCGTTGGAATCATTGTCTACCGTGGTTTATACTTTGGCATGTATGATTCTCTGAAACCAGTGGTCTTGGTGGGAACTTTGCAGGATAGTTTCTTGGCTAGCTTTGCTCTGGGGTGGCTGGTTACTATCAGTGCAAGCATTTCCTCGTACCCCTTGGATACGGTTCGCAGAAGAATGATGATGACATCGGGTGAAGCTGTGAAGTACAAAAGCTCTTTGGATGCATTCTCGCAAATCGTGAAGAATGAAGGTTCAAAATCTCTCTTCAAGGGTGCCGGCGCAAACATCCTTCGTGCAGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGACAAACTTCAGTTACTTGTTCTTGGAAAGAAGTATGGTTCTGGTGGGGCTTGA 1251 0.4636 MITVRDSLTSGAFHSIYKHSTTQAMMIDKQQHPRIEQKLAGQLHLRSNSNLSPHVGTCYGGLKRLALFQQRFSLANYSNAGLQFPLMPACKPTNYMHSAGSPVFIPSPSEKNWGRFATDFLMGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFVSLWRGNTANVIRYFPTQALNFAFKDYFKKLFNFKKDRDGYWKWFAGNVASGGAAGAVSSVFVYSLDYARTRLASDAKAGKKGGERQFNGLIDVYRKTIQSDGVAGLYRGFNVSCVGIIVYRGLYFGMYDSLKPVVLVGTLQDSFLASFALGWLVTISASISSYPLDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGSKSLFKGAGANILRAVAGAGVLAGYDKLQLLVLGKKYGSGGA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00058 416 PRINTS Adenine nucleotide translocator signature 219 232 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00058 416 PRINTS Adenine nucleotide translocator signature 193 205 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00058 416 PRINTS Adenine nucleotide translocator signature 116 128 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00058 416 PRINTS Adenine nucleotide translocator signature 324 340 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00058 416 PRINTS Adenine nucleotide translocator signature 160 181 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00058 416 PRINTS Mitochondrial carrier protein signature 234 252 IPR002067 GO:0055085
Vium1159g00058 416 PRINTS Mitochondrial carrier protein signature 328 350 IPR002067 GO:0055085
Vium1159g00058 416 PRINTS Mitochondrial carrier protein signature 132 146 IPR002067 GO:0055085
Vium1159g00058 416 PRINTS Mitochondrial carrier protein signature 284 302 IPR002067 GO:0055085
Vium1159g00058 416 PRINTS Mitochondrial carrier protein signature 182 202 IPR002067 GO:0055085
Vium1159g00058 416 PRINTS Mitochondrial carrier protein signature 119 132 IPR002067 GO:0055085
Vium1159g00058 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 311 IPR018108 -
Vium1159g00058 416 SUPERFAMILY Mitochondrial carrier 114 401 IPR023395 -
Vium1159g00058 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 207 IPR018108 -
Vium1159g00058 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 319 405 IPR018108 -
Vium1159g00058 416 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 109 415 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1159g00058 416 Gene3D Mitochondrial carrier domain 117 412 IPR023395 -
Vium1159g00058 416 FunFam ADP,ATP carrier protein, mitochondrial 117 412 - -
Vium1159g00058 416 Pfam Mitochondrial carrier protein 320 406 IPR018108 -
Vium1159g00058 416 Pfam Mitochondrial carrier protein 218 311 IPR018108 -
Vium1159g00058 416 Pfam Mitochondrial carrier protein 113 211 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00058 Vium-Chr1159 308160 311338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00058 26 416 Antiporters AT5G13490 73.724 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00058 K05863 - gmx:100800843 669.077