Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00054 ATGGAGATCCGTTACAATAACATGAGCTATCCCTACAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTCACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCTCAGGAGAGTTCATACCCTTCAAGTTCGACTACAAGCTTTTACAAATCTGGGCTGTCTGAACCGGGCAGTACCTCGTACTATCAGGATAGTAATGGTTACGAGGTGAATTATCATGAACAATTGATGGATGAGTATAGAAGGCACTCGGAAAAGTCTGCAACAATCAATGAACAAATGACAACAGTACGTATAGAAAGGGAAGGAGTAAACAATGTCACACTAGACAGTTCTACTGAATGTCCGAGAAGGCATCATAATGATTTTAATGACTATGAGGTCAGTTGGGAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGACAGTTGGAACTGAGTGTCGTGGTCTCACCCAAGAACAAATTTCATCGATTCCAGTATCGAAGTACAAGTGTGGACGCTTTTTCTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTGATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATGTGTTACAGAGAGGTGATGGTGGACGTGTCAAAACACAAATAG 738 0.416 MEIRYNNMSYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESSYPSSSTTSFYKSGLSEPGSTSYYQDSNGYEVNYHEQLMDEYRRHSEKSATINEQMTTVRIEREGVNNVTLDSSTECPRRHHNDFNDYEVSWEDNIDPDNMTYEELLELGETVGTECRGLTQEQISSIPVSKYKCGRFFFFRKKSREERCVICQMEYRRGDKRMTLPCKHAYHASCGNKWLSINKACPMCYREVMVDVSKHK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00054 245 ProSiteProfiles Zinc finger RING-type profile. 193 233 IPR001841 -
Vium1159g00054 245 SMART ring_2 193 233 IPR001841 -
Vium1159g00054 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 238 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vium1159g00054 245 FunFam E3 ubiquitin ligase BIG BROTHER 153 238 - -
Vium1159g00054 245 SUPERFAMILY RING/U-box 192 240 - -
Vium1159g00054 245 Pfam Ring finger domain 192 233 IPR001841 -
Vium1159g00054 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 242 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00054 Vium-Chr1159 294415 299231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00054 2 244 C3H Transcription Factor Family AT3G63530 39.024 2.33e-54 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00054 K19045 - gmx:100805963 371.703