Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00053 ATGGAGATCCGTTACAATAACATGAGCTATCCCTACAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTCACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCTCAGGAGAGTTCATACCCTTCAAGTTCGACTACAAGCTTTTACAAATCTGGGCTGTCTGAACCGGGCAGTACCTCGTACTATCAGGATAGTAATGGTTACGAGGTGAATTATCATGAACAATTGATGGATGAGTATAGAAGGCACTCGGAAAAGTCTGCAACAATCAATGAACAAATGACAACAGTACGTATAGAAAGGGAAGGAGTAAACAATGTCACACTAGACAGTTCTACTGAATGTCCGAGAAGGCATCATAATGATTTTAATGACTATGAGGAACTACTTGAATTAGGTGAGACAGTTGGAACTGAGTGTCGTGGTCTCACCCAAGAACAAATTTCATCGATTCCAGTATCGAAGTACAAGTGTGGACGCTTTTTCTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTGATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATGTGTTACAGAGAGGTGATGGTGGACGTGTCAAAACACAAATAG 693 0.4156 MEIRYNNMSYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESSYPSSSTTSFYKSGLSEPGSTSYYQDSNGYEVNYHEQLMDEYRRHSEKSATINEQMTTVRIEREGVNNVTLDSSTECPRRHHNDFNDYEELLELGETVGTECRGLTQEQISSIPVSKYKCGRFFFFRKKSREERCVICQMEYRRGDKRMTLPCKHAYHASCGNKWLSINKACPMCYREVMVDVSKHK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00053 230 ProSiteProfiles Zinc finger RING-type profile. 178 218 IPR001841 -
Vium1159g00053 230 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 223 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vium1159g00053 230 SMART ring_2 178 218 IPR001841 -
Vium1159g00053 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 227 IPR013083 -
Vium1159g00053 230 Pfam Ring finger domain 177 218 IPR001841 -
Vium1159g00053 230 FunFam E3 ubiquitin ligase BIG BROTHER 138 223 - -
Vium1159g00053 230 SUPERFAMILY RING/U-box 174 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00053 Vium-Chr1159 294415 299232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00053 2 229 C3H Transcription Factor Family AT3G63530 35.102 2.87e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00053 K19045 - gmx:100805963 332.798