Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium1159g00053 | ATGGAGATCCGTTACAATAACATGAGCTATCCCTACAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTCACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCTCAGGAGAGTTCATACCCTTCAAGTTCGACTACAAGCTTTTACAAATCTGGGCTGTCTGAACCGGGCAGTACCTCGTACTATCAGGATAGTAATGGTTACGAGGTGAATTATCATGAACAATTGATGGATGAGTATAGAAGGCACTCGGAAAAGTCTGCAACAATCAATGAACAAATGACAACAGTACGTATAGAAAGGGAAGGAGTAAACAATGTCACACTAGACAGTTCTACTGAATGTCCGAGAAGGCATCATAATGATTTTAATGACTATGAGGAACTACTTGAATTAGGTGAGACAGTTGGAACTGAGTGTCGTGGTCTCACCCAAGAACAAATTTCATCGATTCCAGTATCGAAGTACAAGTGTGGACGCTTTTTCTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTGATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATGTGTTACAGAGAGGTGATGGTGGACGTGTCAAAACACAAATAG | 693 | 0.4156 | MEIRYNNMSYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESSYPSSSTTSFYKSGLSEPGSTSYYQDSNGYEVNYHEQLMDEYRRHSEKSATINEQMTTVRIEREGVNNVTLDSSTECPRRHHNDFNDYEELLELGETVGTECRGLTQEQISSIPVSKYKCGRFFFFRKKSREERCVICQMEYRRGDKRMTLPCKHAYHASCGNKWLSINKACPMCYREVMVDVSKHK | 230 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium1159g00053 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 178 | 218 | IPR001841 | - | |
Vium1159g00053 | 230 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 223 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
Vium1159g00053 | 230 | SMART | ring_2 | 178 | 218 | IPR001841 | - | |
Vium1159g00053 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 227 | IPR013083 | - | |
Vium1159g00053 | 230 | Pfam | Ring finger domain | 177 | 218 | IPR001841 | - | |
Vium1159g00053 | 230 | FunFam | E3 ubiquitin ligase BIG BROTHER | 138 | 223 | - | - | |
Vium1159g00053 | 230 | SUPERFAMILY | RING/U-box | 174 | 225 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium1159g00053 | Vium-Chr1159 | 294415 | 299232 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium1159g00053 | 2 | 229 | C3H Transcription Factor Family | AT3G63530 | 35.102 | 2.87e-43 | 144 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium1159g00053 | K19045 | - | gmx:100805963 | 332.798 |