Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00048 ATGGCGGCGGCGGCGGCGTCGCAGGGGTACCGCCAACCTTCGACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGGCGTACCTCAGCCACTGTTTCGCCCACACCGGCGAGGTTCTTTCCATCAAGATCATCCGCAACAAGATGACGGGCCAACCCGAGGGTTACGGTTTCATCGAGTTTGTTTCCCACGCGGCAGCGGAGCGCGTACTCCAGACCTACAACGGCATGCAAATGCCCGGCACCGAACAGACCTTCAGGCTCAATTGGGCCTCTTTCGGCATCGGTGAGCGCAGGCCCGATGCGGGCCCAGAATACTCCATCTTCGTGGGCGATCTTGCGCCCGACGTAACCGACTATCTTCTCCAAGAAACCTTCCGGGCCCACTACCACTCCATTCGCGGCGCCAAGGTCGTCACGGATCCCAACACGGGCCGCTCCAAGGGCTACGGCTTCGTCAAATTCTCCGACGAGAACGAACGCAACCGCGCCATGACCGAGATGAACGGGGTTTATTGCTCCACTAGAGCCATGCGCATTAGTGCCGCCACGCCCAAGAAAAGCACCAGTAGTTACGCCGCCGAGCCTGCGCCTTTCACCAAACCTGTGTTCCAGGCTCCGGCTTACACTGCGCCGGTTCAAGTTCAACCTCCGGAGTATGATGTTAATAACACTACCATTTTTGTTGGTAATTTGGATCCTAATGTGTCTGAGGAGGAATTGAAGCAAAACTTTCTGCAATTTGGAGAAATTGTCTCTGTTAAAATTCCGCCGGGCAAGGGATGTGGCTTTGTTCAATTTAGAACTAGAGCATCAGCTGAAGAAGTTATTCAGAGAACGCAGGGAATGATGATAGGCCAACAAGTGGTCAGGATTTCTTGGGGTAGGACCCTAGCAGCTAGACAGGACTTATCTGGTGGGTGGGGACAACAGATGGATCCAAGTCAATGGAATACTTACTATGGATATGGGCAGGGTTATGAAACATATGGTTATGGGGCTGCTCAAGACCCTTTATTGTATACATATGGTGGCTATCAACAGGATCCCGTTGGAGGTGTTCAAGACCCAACTGGTATGCCTGCACCTACCATGGAACCAAGGGAGGAATTGTATGATCCCTCGACAATGTCTGATGTTGACAAGTTAAATGATGCATACCTCAGAGTACATGGAAATTCCATTTTAGGGCGATCGCTATGGCAAAAAACTTCTTCATCATCCTTACCAAAAACTTAA 1260 0.5167 MAAAAASQGYRQPSTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLSIKIIRNKMTGQPEGYGFIEFVSHAAAERVLQTYNGMQMPGTEQTFRLNWASFGIGERRPDAGPEYSIFVGDLAPDVTDYLLQETFRAHYHSIRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRAMRISAATPKKSTSSYAAEPAPFTKPVFQAPAYTAPVQVQPPEYDVNNTTIFVGNLDPNVSEEELKQNFLQFGEIVSVKIPPGKGCGFVQFRTRASAEEVIQRTQGMMIGQQVVRISWGRTLAARQDLSGGWGQQMDPSQWNTYYGYGQGYETYGYGAAQDPLLYTYGGYQQDPVGGVQDPTGMPAPTMEPREELYDPSTMSDVDKLNDAYLRVHGNSILGRSLWQKTSSSSLPKT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00048 419 Gene3D - 218 309 IPR012677 -
Vium1159g00048 419 SUPERFAMILY RNA-binding domain, RBD 105 197 IPR035979 GO:0003676
Vium1159g00048 419 SUPERFAMILY RNA-binding domain, RBD 210 333 IPR035979 GO:0003676
Vium1159g00048 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 307 - -
Vium1159g00048 419 CDD RRM2_SECp43_like 112 191 - -
Vium1159g00048 419 SUPERFAMILY RNA-binding domain, RBD 12 88 IPR035979 GO:0003676
Vium1159g00048 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 304 IPR000504 GO:0003723
Vium1159g00048 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 192 IPR000504 GO:0003723
Vium1159g00048 419 FunFam polyadenylate-binding protein RBP45 215 312 - -
Vium1159g00048 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 90 IPR000504 GO:0003723
Vium1159g00048 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 297 IPR000504 GO:0003723
Vium1159g00048 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 179 IPR000504 GO:0003723
Vium1159g00048 419 CDD RRM1_SECp43_like 21 101 - -
Vium1159g00048 419 FunFam Polyadenylate-binding protein RBP47B 19 99 - -
Vium1159g00048 419 FunFam Polyadenylate-binding protein RBP47B 101 202 - -
Vium1159g00048 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 100 IPR000504 GO:0003723
Vium1159g00048 419 SMART rrm1_1 114 188 IPR000504 GO:0003723
Vium1159g00048 419 SMART rrm1_1 21 96 IPR000504 GO:0003723
Vium1159g00048 419 SMART rrm1_1 233 300 IPR000504 GO:0003723
Vium1159g00048 419 Gene3D - 103 202 IPR012677 -
Vium1159g00048 419 Gene3D - 19 99 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00048 Vium-Chr1159 259295 262489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00048 21 311 Eukaryotic Initiation Factors Gene Family AT2G36660 25.338 3.86e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00048 - - gmx:100799421 674.855