Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00047 ATGGCTGCAACTCCTTCCAAATGCAAATTGCGATCTCAATCCGATGCTAAATCATCGCCGACTGTAATCCCAAGCACTCCGCAAACCCTACATCTGCGCAGATCCCTACGCGCCAGGTCCCTCCTCTTCGATGCTCCCAAATCTCCCAATTCACCTTGTGAAATCTCCCTCACAACTCCCAAACGGAGAAATAAACGAATCAGCGATAATGTCGGGCATGATTCTGGCGAAGTCAAAGTCGCCACTAAAGAATCAGCTAAGATGAACGGTGCATCAAAGGAAAAGTATAGGAAGAGCTCAATTGAAGCTTTTCTCGCTCCGGTGACGCCGGATTCTTCGGAGAAGACCTCAAAGAGGAAGAGGGAGGGTGAGAAGAAGGGTGTGGTTACCAGAGCTAAAAGGGGGAAATTTGAGAATGAAAAAAGGAGTTCAAAGTTGCCTGCTAGGCGCCAGTATTACAAAAAGGTGATTTTTGATGGGGGGGAGTTTGAAGTGGGGGATGACGTTTACGTCAAGAGGAGAGAAGATGCTGCTTCCGATGATGAAGATCCCGAGGTTGAGGTGTGTAGGATGTGTTTCATGACAAACAATGAGGTCCTGATTGAGTGTGACGATTGTTTGAATGGGTTTCATTTGAAATGTCTGAAGCCTCCATTGAAGGATGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGACGCTCGGAGGGTCGGTAAGGAGGTTCATCTTCCAAAACCTCCGGTGGGTAAGAAAGTGGTTAGAACTTACAGGGAGAAACTTCTTTCCAGTGATTTGTGGGCTGCTCATATTGAAAGCATATGGAAAGAGGTAGACAGCAACTATTGGTGTCGGGTGCGTTGGTATACAATCCCGGAAGAGACTTCTGTAGGGAGGCAGCCTCATAACCTGAGAAGGGAGCTATACCGAACTAATGAGTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCTTTGTTATGACCCCTAAAGAATATGCTAACGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCAATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAGACCGACAGTGATGAAGACTGGGGCCTTGACAAGGAATCAGATTCTGATACAGATGAAGATGTTGGATATGAAGAAGAAAACACTAAAGACGGACTGTCTCAGCCATCAAAAGGCCACCACCTAGCTGCAAATCTTCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACTAAAAGAATTCCACAGCATGTAAGGTCTCACAAACAGACCGATCTTGAGAGAGCAAAGGCTACACTGTTGTTGGCATCACTACCTAAATCTTTACCTTGTAGAAACAAAGAAATGGAGGAGATAACTACATTCCTCAAAGGTGCTATTTCTGACAATCAATGTCTGGGAGGTTGCCTCTACATTCATGGAGTTCCCGGAACTGGCAAGACAATGAGTGTACTATCGGTGATGAGGAGCTTGAAGGCAGAAGTTGATGCTGGAAACATCAAACCATACACATTTGTGGAGATTAACGGTTTGAAGTTGGCATCACCAGAAAATATTTATCGGGTCATATACGAGGCACTCAATGGACATAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTGAATGAGAGATTTGTAGAAGGAAAGAAAATCAGAGATGAGGCTGATCGACCTTGTATTTTGCTTATTGATGAACTCGATCTTCTAGTAACCAGAAACCAATCGGTTCTGTATAATATTCTTGACTGGCCTACTAAGCCACATTCCAAACTAATAGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAATTACTTCCTCGTATATCAAGCAGAATGGGAATTCAGAGGCTTTGCTTTGGCCCATATAATTTTCACCAGCTTCAAGAAATCATCTCAAGTCGCCTAAATGGAATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCTGAAATTGCAGATTATAGAATGAAGAAGTTAATTTCTAATCCTGATCTTGTTACTACAGGAAAGCTGCTTGTTGGAATGGTAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGATTGAGCAAAATTTTCCTGACAGCTATGGTACACGAGCTTTATAACACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAACGAGGGTTTCATGCCTATGTATCAGCAACGCAGAAGTTTTTCCTGGATATGATACTCTGCTGCAAGTGGGCTGTAAGCTAGGTGAATGCAGGATTATTTTATGTGAAGCAGGCTCCAAGCACAAGTTGCAAAAATTGCAGCTTAATTTTCCCAGTGATGATGTGGCCTTTGCGCTGAGAGAATGCAAAGATCTACCTTGGCTGTCAAAGTATCTAATGTAG 2529 0.4338 MAATPSKCKLRSQSDAKSSPTVIPSTPQTLHLRRSLRARSLLFDAPKSPNSPCEISLTTPKRRNKRISDNVGHDSGEVKVATKESAKMNGASKEKYRKSSIEAFLAPVTPDSSEKTSKRKREGEKKGVVTRAKRGKFENEKRSSKLPARRQYYKKVIFDGGEFEVGDDVYVKRREDAASDDEDPEVEVCRMCFMTNNEVLIECDDCLNGFHLKCLKPPLKDVPEGDWICGFCDARRVGKEVHLPKPPVGKKVVRTYREKLLSSDLWAAHIESIWKEVDSNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNEFADIEMESVLRHCFVMTPKEYANASNEGDDVFLCEYEYDINWHSFKRLADIDNERENGEETDSDEDWGLDKESDSDTDEDVGYEEENTKDGLSQPSKGHHLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFLKGAISDNQCLGGCLYIHGVPGTGKTMSVLSVMRSLKAEVDAGNIKPYTFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKIRDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNFHQLQEIISSRLNGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKLISNPDLVTTGKLLVGMVDVEAAIQEMFQAPHIQMMKSCSRLSKIFLTAMVHELYNTGMGETTFEKLATRVSCLCISNAEVFPGYDTLLQVGCKLGECRIILCEAGSKHKLQKLQLNFPSDDVAFALRECKDLPWLSKYLM 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00047 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 242 IPR013083 -
Vium1159g00047 842 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 293 836 - -
Vium1159g00047 842 ProSiteProfiles BAH domain profile. 244 361 IPR001025 GO:0003682
Vium1159g00047 842 Pfam BAH domain 163 359 IPR001025 GO:0003682
Vium1159g00047 842 Gene3D - 252 445 IPR043151 -
Vium1159g00047 842 SMART BAH_4 220 361 IPR001025 GO:0003682
Vium1159g00047 842 Pfam AAA lid domain 663 696 IPR041083 -
Vium1159g00047 842 ProSitePatterns Zinc finger PHD-type signature. 189 232 IPR019786 -
Vium1159g00047 842 MobiDBLite consensus disorder prediction 7 33 - -
Vium1159g00047 842 MobiDBLite consensus disorder prediction 367 409 - -
Vium1159g00047 842 MobiDBLite consensus disorder prediction 59 77 - -
Vium1159g00047 842 MobiDBLite consensus disorder prediction 1 77 - -
Vium1159g00047 842 FunFam Origin recognition complex subunit 1 184 251 - -
Vium1159g00047 842 SMART AAA_5 485 639 IPR003593 GO:0016887
Vium1159g00047 842 Pfam PHD-finger 189 234 IPR019787 -
Vium1159g00047 842 FunFam Origin recognition complex subunit 1 638 730 - -
Vium1159g00047 842 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Vium1159g00047 842 Gene3D - 446 639 IPR027417 -
Vium1159g00047 842 SMART PHD_3 188 233 IPR001965 -
Vium1159g00047 842 ProSiteProfiles Zinc finger PHD-type profile. 186 235 IPR019787 -
Vium1159g00047 842 MobiDBLite consensus disorder prediction 367 397 - -
Vium1159g00047 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 706 IPR027417 -
Vium1159g00047 842 MobiDBLite consensus disorder prediction 107 143 - -
Vium1159g00047 842 Gene3D - 640 730 - -
Vium1159g00047 842 MobiDBLite consensus disorder prediction 113 143 - -
Vium1159g00047 842 FunFam Origin recognition complex subunit 1 252 444 - -
Vium1159g00047 842 Pfam ATPase family associated with various cellular activities (AAA) 490 635 IPR003959 GO:0005524|GO:0016887
Vium1159g00047 842 FunFam Origin recognition complex subunit 1 442 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00047 Vium-Chr1159 251932 257977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00047 10 841 Core DNA Replication Machinery Family AT4G14700 61.786 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium1159g00047 BAH 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00047 K02603 - gmx:100798547 1446.41