Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00045 ATGAGGAAGCCGGAACTGTGTAGTGGTAAAGACAGCAAGTTTAGAAAGGGATTGTGGTCGCCAGAAGAAGATGAGAAACTGATGAACTACATGCTGAACAATGGACAAGGTTGTTGGAGCGACGTGGCAAGAAATGCTGGCCTCCAAAGATGTGGCAAAAGTTGTCGGCTACGATGGATCAATTACCTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCTTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGAGAACCGACAATGAGATAAAAAACTTTTGGAATTCAACCATAAAGAAAAGACTCAAGAACATGTCTACGACCACAGCTTCAACCTCACCAAATTCAAGTGAGACCTCGTCTGAACCAAGTAATAATAAAGACCTCAACATGGGAGGGTTTATGCCTACACAACATCATCAGCATGCAACCTTTGTGCCTGTGTTTGGTTCATCTCCAACACAATCGATGCAAACAACAGTTTTCAACACAATGATCGAAAGGTTGGATCATGAACTAAACATGCCACACGTTGGTGAATGCTTGGAAGGCACAGGGCCATGCTTTTCTCAAAATGAAGCTCACAACAAAAGTTCTTATTTAGAAAACGGAGTCTTTGGGAGTGTAAATATTGGGATTGAAGGGGATATGTTTGTTCCTCCCCTTGAGAATCTAAACACCAGCAACAATCATAACCTGAGTAGCACCTGCAAGAGTTACTTTGATGACATAAATAGTATCCTTAACAACTGCAACATTGGCATATCTGGTGAAAATAAGGAAGGAGTGGAGAATTTGTTTCAGCAAGATGCAGAATGGGACTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCGTTTGTTGATTTTTCATTCTGA 927 0.4229 MRKPELCSGKDSKFRKGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSFLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSTTTASTSPNSSETSSEPSNNKDLNMGGFMPTQHHQHATFVPVFGSSPTQSMQTTVFNTMIERLDHELNMPHVGECLEGTGPCFSQNEAHNKSSYLENGVFGSVNIGIEGDMFVPPLENLNTSNNHNLSSTCKSYFDDINSILNNCNIGISGENKEGVENLFQQDAEWDFEELMKDVSSFPFVDFSF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00045 308 SMART sant 68 116 IPR001005 -
Vium1159g00045 308 SMART sant 15 65 IPR001005 -
Vium1159g00045 308 FunFam MYB transcription factor 13 69 - -
Vium1159g00045 308 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vium1159g00045 308 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Vium1159g00045 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vium1159g00045 308 CDD SANT 71 111 IPR001005 -
Vium1159g00045 308 FunFam Transcription factor MYB46 70 142 - -
Vium1159g00045 308 MobiDBLite consensus disorder prediction 120 143 - -
Vium1159g00045 308 Gene3D - 70 146 - -
Vium1159g00045 308 Gene3D - 16 68 - -
Vium1159g00045 308 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vium1159g00045 308 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vium1159g00045 308 CDD SANT 19 63 IPR001005 -
Vium1159g00045 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vium1159g00045 308 PANTHER MYB DOMAIN PROTEIN 55 7 295 - -
Vium1159g00045 308 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00045 Vium-Chr1159 227528 230194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00045 1 303 MYB Transcription Factor Family AT5G12870 47.188 5.29e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1159g00045 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00045 K09422 - gmx:100799410 396.356