Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00030 ATGAGAGAACAAAGCTTTGGAGATAAGATGCATGGAATTACAACAACTCTCCCTCTCGCTGCAAACACCTTCCTTTATTGTGCCAGCAACACTCGCTTTTCTCTCAGATCTTTTCAACCAAATTGTTGCATAACCACTTCTAAAATCAGCTATGCAAGTCCTTTTCACCGTTCACAGTGGAAGCAACAGAGAAAAGAAAGATGGGGCAATAGAACGATGGTGGTGAGAGCAAGGCGTGGCGAGTCGCCGTACGAAGTTTTGGGTGTGTCTCCATCCGCAACCGTCGACGAAATCAAAAGGGCGTATCGGAAACTTGCTCTTAAGTATCATCCTGATGTCAATAAAGAGGAAAAGGCACAGGAGAAATTCATGAGGATAAAACATGCATACAATACATTGCTAAATTCCAGTTCCCGCAAAAGATATGATTCTGGAAGTCAAGGTTACGATTTTTCTCAAGGAAGCCGAAGTAGGAATGCACAACCTGAAGAAGAATTTTATGGACTAGAGGAATTCTTTAAGGATCTTCAAGAAGAATTCAGGAACTGGGAAGCAAACGCTGCTTCAGAAGGAAAGCCAAAGAGCCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTACAGATCAGAATGGTGATTACGAGACACCTCAAGGAGAAAATGCATCCAACTTTTCTGGGAGAGAGACACCAAACAGTAGCAGTAATCCAGGTGAAGCTAGCAAGGGAAGCGTTGAGGATAACCTTGAGGAAATAGAAGCCACTCTGGCTCAGCTGAAAAAGGAATTAGGCTTATAG 828 0.4287 MREQSFGDKMHGITTTLPLAANTFLYCASNTRFSLRSFQPNCCITTSKISYASPFHRSQWKQQRKERWGNRTMVVRARRGESPYEVLGVSPSATVDEIKRAYRKLALKYHPDVNKEEKAQEKFMRIKHAYNTLLNSSSRKRYDSGSQGYDFSQGSRSRNAQPEEEFYGLEEFFKDLQEEFRNWEANAASEGKPKSLWEELAEIGEEFVEFLEKELNITDQNGDYETPQGENASNFSGRETPNSSSNPGEASKGSVEDNLEEIEATLAQLKKELGL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00030 275 MobiDBLite consensus disorder prediction 220 252 - -
Vium1159g00030 275 CDD DnaJ 83 135 IPR001623 -
Vium1159g00030 275 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Vium1159g00030 275 MobiDBLite consensus disorder prediction 138 160 - -
Vium1159g00030 275 SMART dnaj_3 81 138 IPR001623 -
Vium1159g00030 275 Gene3D DnaJ domain 80 189 IPR036869 -
Vium1159g00030 275 Pfam DnaJ domain 83 143 IPR001623 -
Vium1159g00030 275 Coils Coil 252 272 - -
Vium1159g00030 275 FunFam Chaperone DnaJ-domain superfamily protein 79 189 - -
Vium1159g00030 275 SUPERFAMILY Chaperone J-domain 55 142 IPR036869 -
Vium1159g00030 275 MobiDBLite consensus disorder prediction 219 259 - -
Vium1159g00030 275 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 47 223 - -
Vium1159g00030 275 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Vium1159g00030 275 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vium1159g00030 275 PRINTS DnaJ domain signature 102 117 IPR001623 -
Vium1159g00030 275 PRINTS DnaJ domain signature 118 138 IPR001623 -
Vium1159g00030 275 MobiDBLite consensus disorder prediction 138 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00030 Vium-Chr1159 157878 161060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00030 84 144 C2H2 Transcription Factor Family AT1G74250 41.791 6.19e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00030 - - gmx:100793601 422.935