Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00029 ATGAGAGAACAAAGCTTTGGAGATAAGATGCATGGAATTACAACAACTCTCCCTCTCGCTGCAAACACCTTCCTTTATTGTGCCAGCAACACTCGCTTTTCTCTCAGATCTTTTCAACCAAATTGTTGCATAACCACTTCTAAAATCAGCTATGCAAGTCCTTTTCACCGTTCACAGTGGAAGCAACAGAGAAAAGAAAGATGGGGCAATAGAACGATGGTGGTGAGAGCAAGGCGTGGCGAGTCGCCGTACGAAGTTTTGGGTGTGTCTCCATCCGCAACCGTCGACGAAATCAAAAGGGCGTATCGGAAACTTGCTCTTAAGTATCATCCTGATGTCAATAAAGAGGAAAAGGCACAGGAGAAATTCATGAGGATAAAACATGCATACAATACATTGCTAAATTCCAGTTCCCGCAAAAGATATGATTCTGGAAGTCAAGGTTACGATTTTTCTCAAGGAAGCCGAAGTAGGAATGCACAACCTGAAGAAGAATTTTATGGACTAGGTAATTTATTGAGGGATGTTCAAATAACAATAGAGGAATTCTTTAAGGATCTTCAAGAAGAATTCAGGAACTGGGAAGCAAACGCTGCTTCAGAAGGAAAGCCAAAGAGCCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTACAGATCAGAATGGTGATTACGAGACACCTCAAGGAGAAAATGCATCCAACTTTTCTGGGAGAGAGACACCAAACAGTAGCAGTAATCCAGGTGAAGCTAGCAAGGGAAGCGTTGAGGATAACCTTGAGGAAATAGAAGCCACTCTGGCTCAGCTGAAAAAGGAATTAGGCTTATAG 861 0.4228 MREQSFGDKMHGITTTLPLAANTFLYCASNTRFSLRSFQPNCCITTSKISYASPFHRSQWKQQRKERWGNRTMVVRARRGESPYEVLGVSPSATVDEIKRAYRKLALKYHPDVNKEEKAQEKFMRIKHAYNTLLNSSSRKRYDSGSQGYDFSQGSRSRNAQPEEEFYGLGNLLRDVQITIEEFFKDLQEEFRNWEANAASEGKPKSLWEELAEIGEEFVEFLEKELNITDQNGDYETPQGENASNFSGRETPNSSSNPGEASKGSVEDNLEEIEATLAQLKKELGL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00029 286 CDD DnaJ 83 135 IPR001623 -
Vium1159g00029 286 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Vium1159g00029 286 Coils Coil 263 283 - -
Vium1159g00029 286 MobiDBLite consensus disorder prediction 138 160 - -
Vium1159g00029 286 Pfam DnaJ domain 83 143 IPR001623 -
Vium1159g00029 286 SMART dnaj_3 81 138 IPR001623 -
Vium1159g00029 286 MobiDBLite consensus disorder prediction 231 263 - -
Vium1159g00029 286 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 47 234 - -
Vium1159g00029 286 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Vium1159g00029 286 Gene3D DnaJ domain 80 199 IPR036869 -
Vium1159g00029 286 PRINTS DnaJ domain signature 102 117 IPR001623 -
Vium1159g00029 286 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vium1159g00029 286 PRINTS DnaJ domain signature 118 138 IPR001623 -
Vium1159g00029 286 SUPERFAMILY Chaperone J-domain 55 142 IPR036869 -
Vium1159g00029 286 MobiDBLite consensus disorder prediction 230 270 - -
Vium1159g00029 286 MobiDBLite consensus disorder prediction 138 161 - -
Vium1159g00029 286 FunFam Chaperone DnaJ-domain superfamily protein 79 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00029 Vium-Chr1159 157876 161060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00029 84 144 C2H2 Transcription Factor Family AT1G74250 41.791 6.33e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00029 - - gmx:100812972 436.032