Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00028 ATGAGAGAACAAAGCTTTGGAGATAAGATGCATGGAATTACAACAACTCTCCCTCTCGCTGCAAACACCTTCCTTTATTGTGCCAGCAACACTCGCTTTTCTCTCAGATCTTTTCAACCAAATTGTTGCATAACCACTTCTAAAATCAGCTATGCAAGTCCTTTTCACCGTTCACAGTGGAAGCAACAGAGAAAAGAAAGATGGGGCAATAGAACGATGGTGGTGAGAGCAAGGCGTGGCGAGTCGCCGTACGAAGTTTTGGGTGTGTCTCCATCCGCAACCGTCGACGAAATCAAAAGGGCGTATCGGAAACTTGCTCTTAAGTATCATCCTGATGTCAATAAAGAGGAAAAGGCACAGGAGAAATTCATGAGGATAAAACATGCATACAATACATTGCTAAATTCCAGTTCCCGCAAAAGATATGATTCTGGAAGTCAAGGTTACGATTTTTCTCAAGGAAGCCGAAGTAGGAATGCACAACCTGAAGAAGAATTTTATGGACTAGGTAATTTATTGAGGGATGTTCAAATAACAATAGAGGAATTCTTTAAGGATCTTCAAGAAGAATTCAGGAACTGGGAAGCAAACGCTGCTTCAGAAGGAAAGCCAAAGAGCCTATGGGAGGAATTGGCGTATTTTAAATTTTTCCTTTCAGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGA 690 0.413 MREQSFGDKMHGITTTLPLAANTFLYCASNTRFSLRSFQPNCCITTSKISYASPFHRSQWKQQRKERWGNRTMVVRARRGESPYEVLGVSPSATVDEIKRAYRKLALKYHPDVNKEEKAQEKFMRIKHAYNTLLNSSSRKRYDSGSQGYDFSQGSRSRNAQPEEEFYGLGNLLRDVQITIEEFFKDLQEEFRNWEANAASEGKPKSLWEELAYFKFFLSGNRRRICGVP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00028 229 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 47 211 - -
Vium1159g00028 229 Pfam DnaJ domain 83 143 IPR001623 -
Vium1159g00028 229 PRINTS DnaJ domain signature 102 117 IPR001623 -
Vium1159g00028 229 PRINTS DnaJ domain signature 118 138 IPR001623 -
Vium1159g00028 229 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vium1159g00028 229 FunFam Chaperone DnaJ-domain superfamily protein 79 200 - -
Vium1159g00028 229 CDD DnaJ 83 135 IPR001623 -
Vium1159g00028 229 Gene3D DnaJ domain 80 199 IPR036869 -
Vium1159g00028 229 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Vium1159g00028 229 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Vium1159g00028 229 MobiDBLite consensus disorder prediction 138 160 - -
Vium1159g00028 229 SMART dnaj_3 81 138 IPR001623 -
Vium1159g00028 229 MobiDBLite consensus disorder prediction 138 161 - -
Vium1159g00028 229 SUPERFAMILY Chaperone J-domain 55 142 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00028 Vium-Chr1159 157874 160541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00028 84 144 C2H2 Transcription Factor Family AT1G74250 41.791 4.41e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00028 - - gmx:100812972 322.398